Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1399 a.a., DNA-directed RNA polymerase subunit beta' from Pseudomonas segetis P6

 Score = 56.2 bits (134), Expect = 6e-12
 Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 11  ENSVLPP--LLKRELSEKILREEISEEYLVDEIISET-----TRAYERTL-----VEPGE 58
           E+ ++P   L+  +  E I    I E  +   I  ET      + Y R L     +  GE
Sbjct: 854 EDVIVPAGTLVDEQWVEFIELNSIDEVVVRSPITCETRYGICAKCYGRDLARGHQINIGE 913

Query: 59  AVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           AVGV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 914 AVGVIAAQSIGEPGTQLTMRTFHIGGAA 941



 Score = 40.0 bits (92), Expect = 4e-07
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 305  LMCTDGVVKPIGRHGIGGEKASV-----LARAAFEETVKHLYSASMRGYVDELGGVVENI 359
            L   D  V    R  +G  KAS+     ++ A+F+ET + L  A++ G  D L G+ EN+
Sbjct: 1292 LAAADKFVAKYTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351

Query: 360  IVGKPISMGTG 370
            +VG+ I  GTG
Sbjct: 1352 VVGRLIPAGTG 1362