Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1438 a.a., DNA-directed RNA polymerase subunit beta' from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 57.0 bits (136), Expect = 3e-12
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           +V+ GEAVGV+AAQSIGEPGTQ+T+RTFH  G A
Sbjct: 917 MVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTA 950



 Score = 53.5 bits (127), Expect = 4e-11
 Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 46/299 (15%)

Query: 89   NVTLGLPRMIEIVDARKEPSTPTMTIYLNDEF------KGNREKAATVAKNIESTNVESV 142
            ++T GLPR+ E+ +AR  PS P +   ++         +GNRE        ++   +  +
Sbjct: 1133 DITGGLPRVTELFEARN-PSNPAVVSEIDGVVTYGSVKRGNREIFIESKDGVKKKYMVPL 1191

Query: 143  SEDISVDLVNECITIILNNQQLESRGLTVPDVID-----AIKSKMKLKIEDHENVLNLKI 197
            S+ I V    +    I     L    +T  D+++     A++  +  +I++   +  +KI
Sbjct: 1192 SKHILV----QDNDFIRAGMPLSDGAITPTDILNIQGPGAVQEYLVNEIQEVYRLQGVKI 1247

Query: 198  KTPSLKAL-RKRLPKVRAIHLKGVQNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGV-DT 255
                ++ + R+ + KV  +       ++     + VD+     E  +I ++  +E   D+
Sbjct: 1248 NDKHIEVVVRQMMQKVVVVDAGDTSFLEN----QTVDKISFMEENDHIIDMKVVEDAGDS 1303

Query: 256  TKTTTNNIVEIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKP- 314
            T      IV  +                   L ++  ++ +R L +V        V +P 
Sbjct: 1304 TNLKPGQIVTPR------------------RLRDENSSLKRRDLRLVTVRDAQPAVSRPT 1345

Query: 315  ---IGRHGIGGEKASVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
               I +  +G +  S ++ A+F+ET K L  A+++G  DEL G+ EN+IVG  I  GTG
Sbjct: 1346 LQGITQASLGTQ--SFISAASFQETTKVLSEAAIKGKADELLGLKENVIVGHLIPAGTG 1402