Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1419 a.a., DNA-directed RNA polymerase subunit beta' from Methylophilus sp. DMC18

 Score = 54.3 bits (129), Expect = 2e-11
 Identities = 24/32 (75%), Positives = 28/32 (87%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAG 84
           L+  GE+VGV+AAQSIGEPGTQ+TMRTFH  G
Sbjct: 915 LISIGESVGVIAAQSIGEPGTQLTMRTFHIGG 946



 Score = 41.2 bits (95), Expect = 2e-07
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 326  SVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            S ++ A+F+ET + L  A++ G  D+L G+ EN+IVG+ I  GTG
Sbjct: 1325 SFISAASFQETTRVLTEAAILGKRDDLRGLKENVIVGRLIPAGTG 1369