Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1496 a.a., DNA-directed RNA polymerase subunit beta' from Magnetospirillum magneticum AMB-1

 Score = 58.2 bits (139), Expect = 2e-12
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 52   TLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAE 87
            T V  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A+
Sbjct: 1001 TRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQ 1036



 Score = 46.6 bits (109), Expect = 5e-09
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 38/146 (26%)

Query: 265  EIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMC----------------- 307
            +I  VLG+EA    +I E+      QG+ ++ +H+ ++   M                  
Sbjct: 1310 DILKVLGVEALAQYLINEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDPGDTTLLVGE 1369

Query: 308  ----------TDGVVKPIGRHGIGGE------KASV-----LARAAFEETVKHLYSASMR 346
                          ++  GR   G        KAS+     ++ A+F+ET + L  A++ 
Sbjct: 1370 QVDRVEFDIENSKAIREQGRPASGTPVLQGITKASLQTHSFISAASFQETTRVLTEAAVS 1429

Query: 347  GYVDELGGVVENIIVGKPISMGTGCI 372
            G VD L G+ EN+IVG+ I  GTG +
Sbjct: 1430 GKVDSLQGLKENVIVGRLIPAGTGAV 1455