Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1406 a.a., DNA-directed RNA polymerase subunit beta' from Erwinia tracheiphila SCR3

 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 23/34 (67%), Positives = 29/34 (85%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           ++  GE++GV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 908 IINKGESIGVIAAQSIGEPGTQLTMRTFHIGGAA 941



 Score = 43.9 bits (102), Expect = 3e-08
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 41/165 (24%)

Query: 247  VFDIEGVDTTKTTTNNIVEIQDVL---GIEAARNAIIYEMDATLGNQGLTVDKRHLMMVA 303
            VF+ E V+     ++      D+L   G+ A    I  E+      QG+ ++ +H+ ++ 
Sbjct: 1198 VFEGERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIV 1257

Query: 304  DLMCTDGVVKPIG---------------------------------RHGIGGEKASV--- 327
              M     ++  G                                 R  +G  KAS+   
Sbjct: 1258 RQMLRKATIENAGSSDFLDGEQVEVSRVKISNRELEANGKIAATYMRDLLGITKASLATE 1317

Query: 328  --LARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
              ++ A+F+ET + L  A++ G  DEL G+ EN+IVG+ I  GTG
Sbjct: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362