Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1407 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Enterobacter asburiae PDN3

 Score = 56.6 bits (135), Expect = 4e-12
 Identities = 24/34 (70%), Positives = 29/34 (85%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           ++  GEA+GV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941



 Score = 46.6 bits (109), Expect = 4e-09
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 215  IHLKGVQNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLG--I 272
            + L+GV  + R I  +  D Y L     N K +  I      K T  N    + + G  +
Sbjct: 1221 LRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIENAGSSEFLEGEQV 1280

Query: 273  EAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLARAA 332
            E +R  I        G  G T  +  L +    + T+                S ++ A+
Sbjct: 1281 EYSRVKIANRDLEANGKIGATFSRDLLGITKASLATE----------------SFISAAS 1324

Query: 333  FEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            F+ET + L  A++ G  DEL G+ EN+IVG+ I  GTG
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362