Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Dickeya dianthicola ME23

 Score = 56.6 bits (135), Expect = 4e-12
 Identities = 24/34 (70%), Positives = 29/34 (85%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           ++  GEA+GV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941



 Score = 47.0 bits (110), Expect = 3e-09
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 26/162 (16%)

Query: 215  IHLKGVQNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEA 274
            + L+GV  + R I+ +             ++EV+ ++GV   K    +I    +V+  + 
Sbjct: 1221 LRLRGVHAVTRYIVNE-------------VQEVYRLQGV---KINDKHI----EVIVRQM 1260

Query: 275  ARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPI-GRHGIGGEKASV-----L 328
             R   I    ++   +G  V+   + +    + T+G +     R  +G  KAS+     +
Sbjct: 1261 LRKGTIVNPGSSEFLEGEQVEMSRIKIANRQLETNGKISATYSRDLLGITKASLATESFI 1320

Query: 329  ARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            + A+F+ET + L  A++ G  DEL G+ EN+IVG+ I  GTG
Sbjct: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362