Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1437 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 58.2 bits (139), Expect = 2e-12
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 10/75 (13%)

Query: 22  ELSEKILREEISEEYLVDEIISET-----TRAYERTL-----VEPGEAVGVVAAQSIGEP 71
           EL+ K+    + E  +   +  E+     T+ Y R L     V+ GE+VGV+AAQSIGEP
Sbjct: 876 ELARKVDESAVEEVEIRSVLTCESRRGVCTKCYGRNLTTGSVVQNGESVGVIAAQSIGEP 935

Query: 72  GTQMTMRTFHYAGVA 86
           GTQ+T+RTFH  G A
Sbjct: 936 GTQLTLRTFHVGGTA 950



 Score = 53.5 bits (127), Expect = 4e-11
 Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 44/298 (14%)

Query: 89   NVTLGLPRMIEIVDARKEPSTPTMTIYLNDEF------KGNREKAATVAKNIESTNVESV 142
            ++T GLPR+ E+ +AR  PS P +   ++         +GNRE        ++   + S+
Sbjct: 1133 DITGGLPRVTELFEARN-PSNPAVVSEIDGVVTYGGIKRGNREIFIESKDGVKKRYMVSL 1191

Query: 143  SEDISVDLVNECITIILNNQQLESRGLTVPDVID-----AIKSKMKLKIEDHENVLNLKI 197
            S+ I   LV E    I   + L    +T  D++      A++  +  +I++   +  +KI
Sbjct: 1192 SKHI---LVQEN-DFIRAGEPLSDGAITPNDILSIKGPTAVQEYLVNEIQEVYRLQGVKI 1247

Query: 198  KTPSLKAL-RKRLPKVRAIHLKGVQNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGVDTT 256
                ++ +  + + KV  +       ++  I    VD++    E  NI +   +     +
Sbjct: 1248 NDKHIEVIVSQMMQKVEILDAGDTGFLQGQI----VDKWAFREENDNILDKKVVMDAGDS 1303

Query: 257  KTTTNNIVEIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKP-- 314
             T    ++       I + R          L ++  ++ ++ L +V        V KP  
Sbjct: 1304 STLKAGMI-------ITSRR----------LRDENSSLKRKDLKLVQVRDAETAVSKPTL 1346

Query: 315  --IGRHGIGGEKASVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
              I    +G E  S ++ A+F+ET K L  A++RG  DEL G+ EN+IVG  I  GTG
Sbjct: 1347 QGITAASLGTE--SFISAASFQETTKVLSEAAIRGKRDELLGLKENVIVGHLIPAGTG 1402