Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1398 a.a., DNA-directed RNA polymerase subunit beta' from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 28/40 (70%), Positives = 32/40 (80%)

Query: 52  TLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAELNVT 91
           T V  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A++  T
Sbjct: 903 TNVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAET 942



 Score = 42.7 bits (99), Expect = 6e-08
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 15/136 (11%)

Query: 242  SNIKEVFDIEGVDTTKTTTNNIV-------EIQDVLGIEAARNAIIYEMDATLGNQGLTV 294
            + ++EV+ ++GV         IV       E+ D       R   +   +A L N    V
Sbjct: 1230 NEVQEVYRLQGVPINDKHIEVIVRQMLQKVEVLDSGETTLIRGDTVEVAEAVLENA--KV 1287

Query: 295  DKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLARAAFEETVKHLYSASMRGYVDELGG 354
            +KR       L  T  V+  I +  +  +  S ++ A+F+ET + L  AS+ G  D L G
Sbjct: 1288 EKRG----GRLATTQPVLLGITKASL--QTRSFISAASFQETTRVLTDASVHGKKDMLEG 1341

Query: 355  VVENIIVGKPISMGTG 370
            + EN+IVG+ I  GTG
Sbjct: 1342 LKENVIVGRLIPAGTG 1357