Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1402 a.a., DNA-directed RNA polymerase beta from Agrobacterium fabrum C58

 Score = 57.4 bits (137), Expect = 3e-12
 Identities = 27/37 (72%), Positives = 30/37 (81%)

Query: 52  TLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAEL 88
           T V  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A +
Sbjct: 904 TPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANV 940



 Score = 46.2 bits (108), Expect = 6e-09
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 36/211 (17%)

Query: 179  KSKMKLKIEDHENVLNLKIKTPSLKALRKRLPKVRAIHLKGVQNIKRVIIRKEVDEYILY 238
            K+K ++ IE  E+          ++ +   +PK +  HL+    I++        EYIL 
Sbjct: 1164 KNKRRVMIEPAED---------GVEPVEYLIPKGKPFHLQEGDYIEK-------GEYILD 1207

Query: 239  SEGSNIKEVFDIEGVDTTKT-TTNNIVEIQDVLG-------IEAARNAIIYEMDATLGNQ 290
               +   ++  I+GV+   +   N I E+  + G       IE     ++ +++ T    
Sbjct: 1208 GNPAP-HDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGD 1266

Query: 291  -----GLTVDKRHLMMVADLMCTDGVVKPIGRHGIGG------EKASVLARAAFEETVKH 339
                 G  VD+  +  + D +  +G     G   + G      +  S ++ A+F+ET K 
Sbjct: 1267 SQYIVGDNVDRIEMEDMNDRLIEEGKKPAYGEPVLLGITKASLQTPSFISAASFQETTKV 1326

Query: 340  LYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            L  A++ G  D L G+ EN+IVG+ I  GTG
Sbjct: 1327 LTEAAIAGKTDTLQGLKENVIVGRLIPAGTG 1357