Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta' from Rhodanobacter sp000427505 FW510-R12

 Score =  238 bits (608), Expect = 1e-66
 Identities = 224/854 (26%), Positives = 367/854 (42%), Gaps = 144/854 (16%)

Query: 59  GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITEIKR 115
           G+VC+ C   V          GHIEL+ P  HI F K +   +  +      +T+ +I+R
Sbjct: 82  GVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSLPSRIGLMLD----MTLRDIER 137

Query: 116 DEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYHQLDG--- 172
             Y E    +  D G        LL E          G+ + D +      +H L     
Sbjct: 138 ILYFEAFVVI--DPGMTALERGQLLSEDQYLEATEEHGD-EFDARMGAEAVFHLLKSLDL 194

Query: 173 -----KAQKQLTSSEVREILEKIPAEDCKLLGINAKVARPEFMVLTVLPVPPVTVRPSIT 227
                + ++++ S+     L+++      +        +PE+MVLTVLPV P  +RP + 
Sbjct: 195 PGEVIRLKEEIASTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLTVLPVLPPDLRPLVP 254

Query: 228 LESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGI 287
           L+ G  +  DL      +I  N RL+  +   AP++I+ +   +LQ  ++   DN   G 
Sbjct: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQESVDALLDNGRRG- 313

Query: 288 PPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPKLIA 347
                 + R L++LA  +KGK+GRFR NL GKRV++S R+VI   P L +++ G+PK +A
Sbjct: 314 RAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLRLHQCGLPKKMA 373

Query: 348 KELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKITDANKDMW 407
            EL       P+   K++A          G    +K  +    +EE     I +      
Sbjct: 374 LEL-----FKPFIFAKLQA---------RGEATTIKAAKKLVEREEGQVWDILEE----- 414

Query: 408 VENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADF 467
                   VI  H      VL NR P+LHR+ I A + K++  +  + +  VC  +NADF
Sbjct: 415 --------VIREH-----PVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADF 461

Query: 468 DGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLTSSLFT-- 525
           DGD+M VHVP S EA+ EA  LM+   +I+SP  G PII    D + G Y +T  L    
Sbjct: 462 DGDQMAVHVPLSIEAQLEARTLMMSSNNILSPANGEPIIVPTQDVVLGLYYMTRELINAK 521

Query: 526 ----------------KDEALTLLKSSGLNVEL------GEPDVIENNIEYYSGKSLFSK 563
                            + A+ L     + ++L      G        +E   G++L ++
Sbjct: 522 GTGMVFSGVSEARRAYDNRAVELHAKVKVRLKLVHIAEDGTRSSETRLVETTVGRALLAE 581

Query: 564 TLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAGIVLNTL 623
            LPEGL  +                        + N +L +  I +         ++N+ 
Sbjct: 582 ILPEGLPFE------------------------LANTELTKKNISR---------LINSS 608

Query: 624 VKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDI 683
            +  G ++  +F D       +     G + GIDD  IP     E + +L++AE++V +I
Sbjct: 609 YRLLGLKETVVFADKLMYTGYRFATRAGISIGIDDMLIP----NEKKTILDEAEKEVVEI 664

Query: 684 VEKYENGTLES---------LPGRGVEESREAYIMQI-LGKARDQAGNVAEKYLSKENHA 733
            ++Y++G + +         +  R  E+  +A I  I   K  D  G +  +     N  
Sbjct: 665 QQQYQSGLVTAGERYNKVVDIWSRTSEQVAKAMIDGIGTEKVVDAEGKMVSQ--KSMNSL 722

Query: 734 ALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRSC 793
            +MA +GARGS+  I  +A   G  +   G +                        +++ 
Sbjct: 723 YIMADSGARGSVAQIRQLAGMRGLMARPDGSIIETP--------------------IKAN 762

Query: 794 YKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIRAEYDGTVRDSRGLV 853
           +++GL   +YF    G R+GL D A++TA SGY+ RRLV+  QD+    D    +    +
Sbjct: 763 FREGLNVLQYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTMDDCGTEDGVTM 822

Query: 854 VQFEYGEDLVDPAK 867
                G D+V+P +
Sbjct: 823 QPIVEGGDVVEPLR 836