Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1394 a.a., DNA-directed RNA polymerase subunit beta' from Xanthobacter sp. DMC5

 Score =  225 bits (573), Expect = 2e-62
 Identities = 241/911 (26%), Positives = 379/911 (41%), Gaps = 133/911 (14%)

Query: 13  ITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------------ 58
           I   + SPE+I++ S  +I   +T +   + P   GL   R+ G I              
Sbjct: 21  IRISIASPEKIKSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMK 80

Query: 59  --GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITEI 113
             G++C+ C   V          GHIEL+ PV HI F K +   +  +      +T+ ++
Sbjct: 81  YKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPSRIGLLLD----MTLKDL 136

Query: 114 KRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYHQLDGK 173
           +R  Y E    +E   G        LL E          GE               L   
Sbjct: 137 ERILYFEYFVVIEP--GITKLKYRQLLSEDDYLRAQDEYGESSFTAMIGAEAIRELLRSM 194

Query: 174 AQKQLTSSEVREILEKIPAEDCKLLGINAKVA--------RPEFMVLTVLPVPPVTVRPS 225
             +++ +   +EI E       K L    K+         +PE+M+LT +PV P  +RP 
Sbjct: 195 DLEKIAADLRQEIAEATTELKPKKLAKRLKIVEAFQLSGNKPEWMILTHVPVIPPDLRPL 254

Query: 226 ITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAP 285
           + L+ G  +  DL      +I  N RL+  I   AP++II +   +LQ  ++  FDN   
Sbjct: 255 VPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQEAVDALFDNGRR 314

Query: 286 GIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPKL 345
           G       + RPL++LA  LKGK+GRFR NL GKRV++S R+VI   P L +++ G+PK 
Sbjct: 315 G-RVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKK 373

Query: 346 IAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKITDANKD 405
           +A EL  P   +           R  +  H       KK+  K+  E             
Sbjct: 374 MALELFKPFIYS-----------RLDAKGHSATVKQAKKLVEKERPE------------- 409

Query: 406 MWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNA 465
             V +I D ++ E        V+ NR P+LHR+ I A +  ++  +  + +  VC  +NA
Sbjct: 410 --VWDILDEVIREHP------VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNA 461

Query: 466 DFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLTSSLFT 525
           DFDGD+M VHVP S EA+ EA  LM+   +I+ P  G PII    D + G Y        
Sbjct: 462 DFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYY------- 514

Query: 526 KDEALTLLKSSGLNVELGEPDVIENNIEYYSGKSLFSKTLPEGLSLQY-----RAKICKK 580
               L+++K      E GE  +  N  E     +  + TL   +  +Y       K   K
Sbjct: 515 ----LSIMKEK----EPGEGMMFANMAEIDHALNAKAITLATKIKGRYIGIGPDGKQYSK 566

Query: 581 CDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAGIVLNTLVKDFGSEDARLFLDAAT 640
               T    +    ++ ++ KL   V++K     E   +++ + +  G +++ +F D   
Sbjct: 567 IYETTPGRMK-IGELLPKDPKLSYDVVNKLMTKKEISNMIDAVYRHCGQKESVIFCDRIM 625

Query: 641 KMSIKAMVLKGFTTGIDDEDIPA---EAIQEIQDLLNKAEQDVED--IVEKYENGTLESL 695
            +        G + G DD  +P    E ++E + L  + EQ   D  I +  +   +   
Sbjct: 626 ALGFYNAFRAGISFGKDDMVVPKKKWELVEETRALTKEYEQQYNDGLITQGEKYNKVVDA 685

Query: 696 PGRGVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALMARTGARGSLLNITMMAASV 755
            G+  +   E  + +I    +D      EK +   N   +M+ +GARGS   +  +A   
Sbjct: 686 WGKCSDRVAEEMMKEISSVKKDPKTG-REKQI---NSIYMMSHSGARGSPAQMKQLAGMR 741

Query: 756 GQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLV 815
           G  +   G +                        + S +K+GL   EYF    G R+GL 
Sbjct: 742 GLMAKPSGEIIESP--------------------IISNFKEGLTVMEYFNSTHGARKGLA 781

Query: 816 DQAVRTAQSGYMQRRLVNALQD---------------IRAEYDG--TVRDSRGLVVQFEY 858
           D A++TA SGY+ RRLV+  QD               +RA  D    V      V+    
Sbjct: 782 DTALKTANSGYLTRRLVDVAQDSIITERDCGSEKGIHMRAIIDAGQIVASLASRVLGRTA 841

Query: 859 GEDLVDPAKAD 869
            ED+V+PA  D
Sbjct: 842 AEDIVEPATGD 852