Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1411 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Variovorax sp. SCN45

 Score =  233 bits (593), Expect = 8e-65
 Identities = 239/906 (26%), Positives = 378/906 (41%), Gaps = 179/906 (19%)

Query: 3   RFDVPKEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP-- 58
           +F   +    I  G+ SPE+IR+ S  ++   +T +   + P   GL   ++ G I    
Sbjct: 10  QFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYE 69

Query: 59  ------------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCP 103
                       G++C+ C   V          GHI+L+ P  HI F K +   L  V  
Sbjct: 70  CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSLPSRLGLVLD 129

Query: 104 HCGKVTITEIKRDEYLEK-------MAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVK 156
               +T+ +I+R  Y E        M  L++ G       D   KE     +     E  
Sbjct: 130 ----MTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEYGDEFIAKMGAEGI 185

Query: 157 ADVKYDKPTAYHQLDGKAQK---QLTSSEVREILEKIPAEDCKLLGINAKVA-RPEFMVL 212
            D+         +LD + ++    LT SEV+    K  ++  K+L    K   +PE+MVL
Sbjct: 186 KDLLEGI-----ELDSEIERLRGDLTGSEVKV---KKNSKRLKVLEAFRKSGIKPEWMVL 237

Query: 213 TVLPVPPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLL 272
            VLPV P  +RP + L+ G  +  DL      +I  N RL   +   AP +I  +   +L
Sbjct: 238 DVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRML 297

Query: 273 QYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPD 332
           Q  +++  DN   G       + R L++LA  +KGK GRFR NL GKRV++S R+VI   
Sbjct: 298 QEAVDSLLDNGRRG-KAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVG 356

Query: 333 PRLSINEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKE 392
           P L +++ G+PKL+A EL       P+   ++ A+         G+   +K  +    KE
Sbjct: 357 PTLKLHQCGLPKLMALEL-----FKPFIFSRLEAM---------GIATTIKAAK----KE 398

Query: 393 EEYKIKITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRT 452
            E    +        V +I + ++ E        V+ NR P+LHR+ I A +  ++  + 
Sbjct: 399 VESGTPV--------VWDILEEVIKEHP------VMLNRAPTLHRLGIQAFEPILIEGKA 444

Query: 453 FRHNLCVCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDF 512
            + +  VC  +NADFDGD+M VHVP S EA+ EA  LML   +++ P  G P I    D 
Sbjct: 445 IQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEARTLMLASNNVLFPASGEPSIVPSQDV 504

Query: 513 ISGAYVLTSSLFT-KDEALTL------------------------LKSSGLNVELGEPDV 547
           + G Y  T      K E L                          +     N E GE   
Sbjct: 505 VLGLYYTTRDRINGKGEGLIFSDIGEVQRALDANEVELTARVAVRITEYTKNKETGEFTP 564

Query: 548 IENNIEYYSGKSLFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVI 607
             + ++   G++L S+ LP+GL      K  KK                           
Sbjct: 565 STSLVDTTVGRALLSEILPKGLPFSNINKALKK--------------------------- 597

Query: 608 DKNGFGSEAGIVLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQ 667
                  E   ++N   +  G ++  +F D   +   +     G +  IDD  +PAE   
Sbjct: 598 ------KEISKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEK-- 649

Query: 668 EIQDLLNKAEQDVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYL 727
               +++++ ++V++I ++Y +G + S         R   ++ I GKA D+   V    L
Sbjct: 650 --HGIIDRSAKEVKEIEQQYVSGLVTS-------GERYNKVVDIWGKAGDEVSKVMMAKL 700

Query: 728 SKE---------------NHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRER 772
           SK+               N   +MA +GARGS   I  +A   G  +   G +       
Sbjct: 701 SKQKVIDRHGKEVEQESFNSIYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETP--- 757

Query: 773 TLPHFGKGSLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLV 832
                            + + +++GL   EYF    G R+GL D A++TA SGY+ RRLV
Sbjct: 758 -----------------ITANFREGLNVLEYFISTHGARKGLADTALKTANSGYLTRRLV 800

Query: 833 NALQDI 838
           +  QD+
Sbjct: 801 DVTQDL 806