Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1399 a.a., DNA-directed RNA polymerase subunit beta' from Pseudomonas putida KT2440

 Score =  229 bits (584), Expect = 9e-64
 Identities = 232/924 (25%), Positives = 384/924 (41%), Gaps = 170/924 (18%)

Query: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58
           +E   I  GL SPE IR+ S  ++   +T +   + P   GL   ++ G +         
Sbjct: 15  EEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGK 74

Query: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKV 108
                  G++C+ C   V           HIEL+ PV HI F K +   +  +      +
Sbjct: 75  YKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSLPSRIGLLMD----M 130

Query: 109 TITEIKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTA-- 166
           T+ +I+R  Y E    +  D G        LL +          G+   D +        
Sbjct: 131 TLRDIERVLYFESYVVI--DPGMTTLEKGQLLNDEQYFEALEEFGD-DFDARMGAEAVRE 187

Query: 167 -YHQLD-----GKAQKQLTSSEVREILEKIPAEDCKLLGINAKVARPEFMVLTVLPVPPV 220
             H +D     G+ ++++  +     ++K+      +         PE+MVLTVLPV P 
Sbjct: 188 LLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLTVLPVLPP 247

Query: 221 TVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYF 280
            +RP + L+ G  +  DL      +I  N RL+  ++  AP++I+ +   +LQ  ++   
Sbjct: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQEAVDALL 307

Query: 281 DNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEV 340
           DN   G       + RPL++LA  +KGK+GRFR NL GKRV++S R+VI+  P L +++ 
Sbjct: 308 DNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQC 366

Query: 341 GIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKIT 400
           G+PK +A EL  P       +  +   ++             KK+  ++  E      + 
Sbjct: 367 GLPKKMALELFKPFIFGKLEMRGLATTIK-----------AAKKMVERELPE------VW 409

Query: 401 DANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVC 460
           D   +          VI  H      VL NR P+LHR+ I A +  ++  +  + +  VC
Sbjct: 410 DVLAE----------VIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454

Query: 461 PPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLT 520
             YNADFDGD+M VHVP + EA+ EA  LM+   +I+SP  G PII    D + G Y +T
Sbjct: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514

Query: 521 -------------------SSLFTKDEALTLLK-SSGLNVELGEPD--VIENN--IEYYS 556
                                +F   EA    K    +N  + E D  V++N   ++   
Sbjct: 515 REAINAKGEGRVFADLQEVDRVFRAGEAALHAKIKVRINETVKERDGSVVKNTRIVDTTV 574

Query: 557 GKSLFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEA 616
           G++L  + +P GL                        Y V+ N  + +  I K       
Sbjct: 575 GRALLFQVVPAGL-----------------------PYDVV-NQPMKKKAISK------- 603

Query: 617 GIVLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKA 676
             ++N   +  G ++  +F D           + G + G++D  IP E  +    ++  A
Sbjct: 604 --LINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKAR----IIGNA 657

Query: 677 EQDVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE------ 730
             +V++I  +Y +G +        +  +   ++ +  KA D+        LSKE      
Sbjct: 658 TDEVKEIESQYASGLV-------TQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRE 710

Query: 731 ---------NHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGS 781
                    N   +MA +GARGS   I  +A   G  +   G +                
Sbjct: 711 GKEVEQESFNSMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP------------ 758

Query: 782 LDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIRAE 841
                   + + +++GL+  +YF    G R+GL D A++TA SGY+ RRLV+  QD+   
Sbjct: 759 --------ITANFREGLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810

Query: 842 YDGTVRDSRGLVVQFEYGEDLVDP 865
                 D   ++     G D+V+P
Sbjct: 811 EIDCGTDQGLVMTPHIEGGDVVEP 834