Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1413 a.a., DNA-directed RNA polymerase subunit beta' from Paraburkholderia sabiae LMG 24235

 Score =  227 bits (578), Expect = 4e-63
 Identities = 230/895 (25%), Positives = 375/895 (41%), Gaps = 171/895 (19%)

Query: 13  ITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------------ 58
           I  GL SP++IR+ S  ++   +T +   + P   GL   ++ G I              
Sbjct: 20  IKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLK 79

Query: 59  --GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITEI 113
             G++C+ C   V          GHIEL+ PV HI F K +   L  V      +T+ +I
Sbjct: 80  HRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLD----MTLRDI 135

Query: 114 KRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAY-HQLDG 172
           +R  Y E    ++  G  P      + +E     V     E +A++  +        ++ 
Sbjct: 136 ERVLYFEAYVVIDP-GMTPLKARQIMTEEDYYNKVEEYGDEFRAEMGAEGVRELLRAINI 194

Query: 173 KAQKQLTSSEVR----EILEKIPAEDCKLL-GINAKVARPEFMVLTVLPVPPVTVRPSIT 227
             Q +   SE++    E   K  A+  K+L        +PE+M+L VLPV P  +RP + 
Sbjct: 195 DEQVETLRSELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILEVLPVLPPELRPLVP 254

Query: 228 LESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGI 287
           L+ G  +  DL      +I  N RL+  +   AP +I+ +   +LQ  +++  DN   G 
Sbjct: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQEAVDSLLDNGRRG- 313

Query: 288 PPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPKLIA 347
                 + RPL++LA  +KGK GRFR NL GKRV++S R+VI   P L +++ G+PKL+A
Sbjct: 314 KAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPTLKLHQCGLPKLMA 373

Query: 348 KELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKITDANKDMW 407
            EL       P+   K+  +         GV   +K  +    KE E        N+   
Sbjct: 374 LEL-----FKPFIFNKLEVM---------GVATTIKAAK----KEVE--------NQTPV 407

Query: 408 VENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADF 467
           V +I + ++ E        V+ NR P+LHR+ I A +  ++  +  + +  VC  +NADF
Sbjct: 408 VWDILEEVIREHP------VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADF 461

Query: 468 DGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLT-SSLFTK 526
           DGD+M VHVP S EA+ EA  LML   +++ P  G P I    D + G Y  T  ++  K
Sbjct: 462 DGDQMAVHVPLSLEAQMEARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGK 521

Query: 527 DEALTLL---------------KSSGLNVEL-----------GEPDVIENNIEYYS--GK 558
            E +T                  +S +NV +           G P  +     Y +  G+
Sbjct: 522 GEGMTFTGVSEALRAYENKEVELASRVNVRITEMVHNEDTSEGAPKFVPKITLYATTVGR 581

Query: 559 SLFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAGI 618
           S+ S+ LP GL      K  KK                                  E   
Sbjct: 582 SILSEILPPGLPFSVLNKPLKK---------------------------------KEISR 608

Query: 619 VLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQ 678
           ++NT  +  G  +  +F D   +   +     G +  +DD  +P +     + ++  A +
Sbjct: 609 LINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQK----ETIVGDAAK 664

Query: 679 DVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE-------- 730
            V++   +Y +G + +       + R   ++ I     +  G    + L+ E        
Sbjct: 665 KVKEYDRQYMSGLVTA-------QERYNNVVDIWSATSEAVGKAMMEQLATEPVVDRDGN 717

Query: 731 -------NHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLD 783
                  N   +MA +GARGS + I  +A   G  +   G +                  
Sbjct: 718 ETRQESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETP-------------- 763

Query: 784 AKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDI 838
                 + + +++GL   +YF    G R+GL D A++TA SGY+ RRLV+  QD+
Sbjct: 764 ------ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDL 812