Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

 Score = 1785 bits (4624), Expect = 0.0
 Identities = 889/889 (100%), Positives = 889/889 (100%)

Query: 1   MDRFDVPKEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGL 60
           MDRFDVPKEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGL
Sbjct: 1   MDRFDVPKEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGL 60

Query: 61  VCKSCSGRVGTCPGHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITEIKRDEYLE 120
           VCKSCSGRVGTCPGHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITEIKRDEYLE
Sbjct: 61  VCKSCSGRVGTCPGHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITEIKRDEYLE 120

Query: 121 KMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYHQLDGKAQKQLTS 180
           KMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYHQLDGKAQKQLTS
Sbjct: 121 KMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYHQLDGKAQKQLTS 180

Query: 181 SEVREILEKIPAEDCKLLGINAKVARPEFMVLTVLPVPPVTVRPSITLESGERSEDDLTH 240
           SEVREILEKIPAEDCKLLGINAKVARPEFMVLTVLPVPPVTVRPSITLESGERSEDDLTH
Sbjct: 181 SEVREILEKIPAEDCKLLGINAKVARPEFMVLTVLPVPPVTVRPSITLESGERSEDDLTH 240

Query: 241 KLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRT 300
           KLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRT
Sbjct: 241 KLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRT 300

Query: 301 LAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPKLIAKELTVPEKVTPYN 360
           LAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPKLIAKELTVPEKVTPYN
Sbjct: 301 LAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPKLIAKELTVPEKVTPYN 360

Query: 361 IEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKITDANKDMWVENITDGMVIERH 420
           IEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKITDANKDMWVENITDGMVIERH
Sbjct: 361 IEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKITDANKDMWVENITDGMVIERH 420

Query: 421 LSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADFDGDEMNVHVPQSE 480
           LSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADFDGDEMNVHVPQSE
Sbjct: 421 LSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADFDGDEMNVHVPQSE 480

Query: 481 EARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLTSSLFTKDEALTLLKSSGLNV 540
           EARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLTSSLFTKDEALTLLKSSGLNV
Sbjct: 481 EARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLTSSLFTKDEALTLLKSSGLNV 540

Query: 541 ELGEPDVIENNIEYYSGKSLFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNG 600
           ELGEPDVIENNIEYYSGKSLFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNG
Sbjct: 541 ELGEPDVIENNIEYYSGKSLFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNG 600

Query: 601 KLLRGVIDKNGFGSEAGIVLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDED 660
           KLLRGVIDKNGFGSEAGIVLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDED
Sbjct: 601 KLLRGVIDKNGFGSEAGIVLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDED 660

Query: 661 IPAEAIQEIQDLLNKAEQDVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAG 720
           IPAEAIQEIQDLLNKAEQDVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAG
Sbjct: 661 IPAEAIQEIQDLLNKAEQDVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAG 720

Query: 721 NVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKG 780
           NVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKG
Sbjct: 721 NVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKG 780

Query: 781 SLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIRA 840
           SLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIRA
Sbjct: 781 SLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIRA 840

Query: 841 EYDGTVRDSRGLVVQFEYGEDLVDPAKADHGKGVDLDKIFTKVNSRYEN 889
           EYDGTVRDSRGLVVQFEYGEDLVDPAKADHGKGVDLDKIFTKVNSRYEN
Sbjct: 841 EYDGTVRDSRGLVVQFEYGEDLVDPAKADHGKGVDLDKIFTKVNSRYEN 889