Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1496 a.a., DNA-directed RNA polymerase subunit beta' from Magnetospirillum magneticum AMB-1

 Score =  190 bits (483), Expect = 5e-52
 Identities = 163/535 (30%), Positives = 251/535 (46%), Gaps = 66/535 (12%)

Query: 13  ITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------------ 58
           I   + SPE+IR+ S  +I   +T +   + P   GL   R+ G I              
Sbjct: 20  IRISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMK 79

Query: 59  --GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITEI 113
             G++C+ C   V          GHIEL+ PV HI F K +   +  +C     +T+ ++
Sbjct: 80  YRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLCD----MTLKDL 135

Query: 114 KRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGE------VKADVKYDKPTAY 167
           +R  Y E    +E  G  P  + + L +E    +V    GE      + A+   D  T  
Sbjct: 136 ERILYFENYVVVEP-GLTPLKIRELLTEEQYMRAV-DEYGEDAFTAKIGAEAIRDMLTVI 193

Query: 168 HQLDGKAQKQLTSSEVR-EILEKIPAEDCKLL-GINAKVARPEFMVLTVLPVPPVTVRPS 225
                KAQ ++   E   E   K   +  KL+       +RPE+M+L V+PV P  +RP 
Sbjct: 194 DLETEKAQLKVDLKETTSEAKRKKLVKRMKLVEAFMESGSRPEWMILEVIPVIPPELRPL 253

Query: 226 ITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAP 285
           + L+ G  +  DL      +I  N RL+  I   AP +I+ +   +LQ  ++  FDN   
Sbjct: 254 VPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRMLQEAVDALFDNGRR 313

Query: 286 GIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPKL 345
           G       + RPL++L+  LKGK+GRFR NL GKRV++S R+VI   P L +++ G+PK 
Sbjct: 314 G-RAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKK 372

Query: 346 IAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKITDANKD 405
           +A EL       P+   K+            G+   +K  +    KE            +
Sbjct: 373 MALEL-----FKPFVYSKLELY---------GMATTIKAAKRMVEKE----------RPE 408

Query: 406 MWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNA 465
           +W  +I + ++ E        V+ NR P+LHR+ I A +  ++  +  + +  VC  +NA
Sbjct: 409 VW--DILEEVIREHP------VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNA 460

Query: 466 DFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLT 520
           DFDGD+M VHVP S EA+ EA  LM+   +I+SP  G PII    D + G Y +T
Sbjct: 461 DFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYIT 515



 Score = 71.2 bits (173), Expect = 4e-16
 Identities = 67/269 (24%), Positives = 112/269 (41%), Gaps = 44/269 (16%)

Query: 619 VLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQ 678
           V++ + +  G ++  +F D    +        G + G DD  IP E     + L+ + E+
Sbjct: 707 VIDVVYRHCGQKETVIFADRVMGLGYSNAFKAGISFGKDDLVIPPEK----ETLVGETEE 762

Query: 679 DVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLS------KENH 732
             ++  ++Y++G +        +  +   ++    K  D   +   K +S      + N 
Sbjct: 763 KAKEYEQQYQDGLI-------TQGEKYNKVVDAWSKCTDDVADAMMKQISSLVPGKQINS 815

Query: 733 AALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRS 792
             +MA +GARGS   +  +A   G  +   G +                        + S
Sbjct: 816 IYMMAHSGARGSAAQMKQLAGMRGLMAKPSGEIIETP--------------------IIS 855

Query: 793 CYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD--IRAEYDGTVRDSR 850
            +K+GL   EYF    G R+GL D A++TA SGY+ RRLV+  QD  I  E  GT   + 
Sbjct: 856 NFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDAIICEEDCGT---TN 912

Query: 851 GLVVQ--FEYGEDLVDPAKADHGKGVDLD 877
           GL V    E GE +   A+   G+    D
Sbjct: 913 GLTVSPVIEGGEVIASLAERILGRSAARD 941