Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1406 a.a., DNA-directed RNA polymerase subunit beta' from Serratia liquefaciens MT49

 Score =  234 bits (596), Expect = 4e-65
 Identities = 238/913 (26%), Positives = 382/913 (41%), Gaps = 144/913 (15%)

Query: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58
           +E   I   L SP+ IR+ S  ++   +T +   + P   GL   R+ G +         
Sbjct: 15  EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74

Query: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKV 108
                  G++C+ C   V          GHIEL+ P  HI F K +   +  +      +
Sbjct: 75  YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD----M 130

Query: 109 TITEIKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYH 168
            + +I+R  Y E    +E  GG        +L E          G+ + D K     A  
Sbjct: 131 PLRDIERVLYFESYVVVE--GGMTNLERRQILTEEQYLDALEEFGD-EFDAKMGAE-AIQ 186

Query: 169 QLDGKAQKQLTSSEVREILEKIPAED--------CKLLGINAKVA-RPEFMVLTVLPVPP 219
            L      +    ++RE L +  +E          KLL    +   +PE+M+LTVLPV P
Sbjct: 187 ALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLP 246

Query: 220 VTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTY 279
             +RP + L+ G  +  DL      +I  N RL+  ++  AP++I+ +   +LQ  ++  
Sbjct: 247 PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDAL 306

Query: 280 FDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINE 339
            DN   G       + RPL++LA  +KGK+GRFR NL GKRV++S R+VI+  P L +++
Sbjct: 307 LDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365

Query: 340 VGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKI 399
            G+PK +A EL  P                 G     G+   +K  +    +EE     I
Sbjct: 366 CGLPKKMALELFKP--------------FIYGKLELRGLATTIKAAKKMVEREEAVVWDI 411

Query: 400 TDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCV 459
            D              VI  H      VL NR P+LHR+ I A +  ++  +  + +  V
Sbjct: 412 LDE-------------VIREHP-----VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLV 453

Query: 460 CPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVL 519
           C  YNADFDGD+M VHVP + EA+ EA  LM+   +I+SP  G PII    D + G Y +
Sbjct: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513

Query: 520 TSSLFTKDEALTLLKSSGLNVELGEPDVIENNIEYYSGKSLFSKTLPEGLSLQYRAKICK 579
           T            + + G  + L  P   E    Y +G +         L  + + +I +
Sbjct: 514 TRDC---------VNAKGEGMVLSGPKEAERI--YRAGLA--------SLHARVKVRITE 554

Query: 580 KCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGF---------GSEA-GIVLNTLVKDFGS 629
           +      E     + +    G+ +  +I   G          G +A   +LNT  +  G 
Sbjct: 555 EIKNTEGESVHQTSIIDTTVGRAILWMIVPRGLPYSIVNQPLGKKAISKMLNTCYRILGL 614

Query: 630 EDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIVEKYEN 689
           +   +F D             G + GIDD  IPA+  + I++    AE +V +I E++++
Sbjct: 615 KPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEE----AETEVAEIQEQFQS 670

Query: 690 GTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE---------------NHAA 734
           G + +         R   ++ I   A ++      + LS E               N   
Sbjct: 671 GLVTA-------GERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFNSIF 723

Query: 735 LMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRSCY 794
           +MA +GARGS   I  +A   G  +   G +                        + + +
Sbjct: 724 MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP--------------------ITANF 763

Query: 795 KKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIRAEYDGTVRDSRGLVV 854
           ++GL   +YF    G R+GL D A++TA SGY+ RRLV+  QD+    D     +  ++ 
Sbjct: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIMMT 823

Query: 855 QFEYGEDLVDPAK 867
               G D+ +P +
Sbjct: 824 PVIEGGDVKEPLR 836