Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Erwinia amylovora T8

 Score =  233 bits (593), Expect = 8e-65
 Identities = 239/918 (26%), Positives = 380/918 (41%), Gaps = 154/918 (16%)

Query: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58
           +E   I   L SP+ IR+ S  ++   +T +   + P   GL   R+ G +         
Sbjct: 15  EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74

Query: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKV 108
                  G++C+ C   V          GHIEL+ P  HI F K +   +  +      +
Sbjct: 75  YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD----M 130

Query: 109 TITEIKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYH 168
            + +I+R  Y E    +E  GG        +L E          G+ + D K        
Sbjct: 131 PLRDIERVLYFESYVVIE--GGMTNLEKRQILTEEQYLDALEEFGD-EFDAKMGAEAIQA 187

Query: 169 QLDGKAQKQLTSSEVREILEKIPAEDCKLLGINAKVA--------RPEFMVLTVLPVPPV 220
            L     +Q   +   E+ E       K L    K+         +PE+M+LTVLPV P 
Sbjct: 188 LLKNMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247

Query: 221 TVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYF 280
            +RP + L+ G  +  DL      +I  N RL+  ++  AP++I+ +   +LQ  ++   
Sbjct: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307

Query: 281 DNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEV 340
           DN   G       + RPL++LA  +KGK+GRFR NL GKRV++S R+VI+  P L +++ 
Sbjct: 308 DNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366

Query: 341 GIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKIT 400
           G+PK +A EL  P                 G     G+   +K  +    +EE     I 
Sbjct: 367 GLPKKMALELFKP--------------FIYGKLELRGLATTIKAAKKMVEREESVVWDIL 412

Query: 401 DANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVC 460
           D              VI  H      VL NR P+LHR+ I A +  ++  +  + +  VC
Sbjct: 413 DE-------------VIREHP-----VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454

Query: 461 PPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLT 520
             YNADFDGD+M VHVP + EA+ EA  LM+   +I+SP  G PII    D + G Y +T
Sbjct: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514

Query: 521 SSLFTKDEALTLLKSSGLNVELGEPDVIENNIEYYSGKSLFSKTLPEGLSLQYRAKICKK 580
                       + + G  + L  P   E    Y +G +          SL  R K+   
Sbjct: 515 RD---------CVNAKGEGMVLTGPKEAER--VYRAGLA----------SLHARVKV--- 550

Query: 581 CDTCTKEECEHDAYVVIRN------GKLLRGVIDKNG---------FGSEA-GIVLNTLV 624
                 E+ EHD +V   +      G+ +  +I   G          G +A   +LNT  
Sbjct: 551 -RITEHEKNEHDEWVAKTSIVDTTIGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCY 609

Query: 625 KDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIV 684
           +  G +   +F D             G + GIDD  IP + +    +++ +AE +V +I 
Sbjct: 610 RILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKV----EIITEAEAEVAEIQ 665

Query: 685 EKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE-------------- 730
           +++++G + +         R   ++ I   A ++      + LS E              
Sbjct: 666 QQFQSGLVTA-------GERYNKVIDIWAAANERVAKAMMENLSTEVVINRDGVEERQVS 718

Query: 731 -NHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGF 789
            N   +MA +GARGS   I  +A   G  +   G +                        
Sbjct: 719 FNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP-------------------- 758

Query: 790 VRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIRAEYDGTVRDS 849
           + + +++GL   +YF    G R+GL D A++TA SGY+ RRLV+  QD+    D      
Sbjct: 759 ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHE 818

Query: 850 RGLVVQFEYGEDLVDPAK 867
             ++     G D+ +P +
Sbjct: 819 GIMMTPVIEGGDVKEPLR 836