Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1406 a.a., DNA-directed RNA polymerase subunit beta' from Erwinia tracheiphila SCR3

 Score =  230 bits (587), Expect = 4e-64
 Identities = 236/898 (26%), Positives = 373/898 (41%), Gaps = 172/898 (19%)

Query: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58
           +E   I   L SP+ IR+ S  ++   +T +   + P   GL   R+ G +         
Sbjct: 15  EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74

Query: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKV 108
                  G++C+ C   V          GHIEL+ P  HI F K +   +  +      +
Sbjct: 75  YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD----M 130

Query: 109 TITEIKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYH 168
            + +I+R  Y E    +E  GG        +L E          G+ + D K        
Sbjct: 131 PLRDIERVLYFESYVVVE--GGMTNLEKRQILTEEQYLDALEEFGD-EFDAKMGAEAIQS 187

Query: 169 QLDGKAQKQLTSSEVREILEKIPAED--------CKLLGINAKVA-RPEFMVLTVLPVPP 219
            L     +Q    ++RE L +  +E          KLL    +   +PE+M+LTVLPV P
Sbjct: 188 LLKNMDLEQ-ECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLP 246

Query: 220 VTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTY 279
             +RP + L+ G  +  DL      +I  N RL+  ++  AP++I+ +   +LQ  ++  
Sbjct: 247 PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDAL 306

Query: 280 FDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINE 339
            DN   G       + RPL++LA  +KGK+GRFR NL GKRV++S R+VI+  P L +++
Sbjct: 307 LDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365

Query: 340 VGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKI 399
            G+PK +A EL  P                 G     G+   +K  +    +EE     I
Sbjct: 366 CGLPKKMALELFKP--------------FIYGKLELRGLATTIKAAKKMVEREEAVVWDI 411

Query: 400 TDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCV 459
            D              VI  H      VL NR P+LHR+ I A +  ++  +  + +  V
Sbjct: 412 LDE-------------VIREHP-----VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLV 453

Query: 460 CPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVL 519
           C  YNADFDGD+M VHVP + EA+ EA  LM+   +I+SP  G PII    D + G Y +
Sbjct: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513

Query: 520 T-SSLFTKDEALTL-------------LKSSGLNVEL----------GEPDVIENNIEYY 555
           T   +  K E + L             L S    V++          GE   I + ++  
Sbjct: 514 TRDCVNAKGEGMVLTGPKEAERVYRAGLASLHARVKVRIIEHEKNDRGEWTAITSLVDTT 573

Query: 556 SGKSLFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSE 615
            G+++    +P+GL                           I N  L +  I K      
Sbjct: 574 IGRAILWMIVPKGLPFS------------------------IVNQALGKKAISK------ 603

Query: 616 AGIVLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNK 675
              +LNT  +  G +   +F D             G + GIDD  IP + +    +++ +
Sbjct: 604 ---MLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKV----EIITE 656

Query: 676 AEQDVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE----- 730
           AE +V +I E++++G + +         R   ++ I   A ++      + LS E     
Sbjct: 657 AEAEVAEIQEQFQSGLVTA-------GERYNKVIDIWAAANERVAKAMMENLSTETVINR 709

Query: 731 ----------NHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKG 780
                     N   +MA +GARGS   I  +A   G  +   G +               
Sbjct: 710 DGEEERQVSFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP----------- 758

Query: 781 SLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDI 838
                    + + +++GL   +YF    G R+GL D A++TA SGY+ RRLV+  QD+
Sbjct: 759 ---------ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDL 807