Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Escherichia coli ECRC62

 Score =  232 bits (592), Expect = 1e-64
 Identities = 240/905 (26%), Positives = 378/905 (41%), Gaps = 128/905 (14%)

Query: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58
           +E   I   L SP+ IR+ S  ++   +T +   + P   GL   R+ G +         
Sbjct: 15  EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74

Query: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKV 108
                  G++C+ C   V          GHIEL+ P  HI F K +   +  +      +
Sbjct: 75  YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD----M 130

Query: 109 TITEIKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYH 168
            + +I+R  Y E    +E  GG        +L E          G+ + D K        
Sbjct: 131 PLRDIERVLYFESYVVIE--GGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQA 187

Query: 169 QLDGKAQKQLTSSEVREILEKIPAED--------CKLLGINAKVA-RPEFMVLTVLPVPP 219
            L     +Q    ++RE L +  +E          KLL    +   +PE+M+LTVLPV P
Sbjct: 188 LLKSMDLEQ-ECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLP 246

Query: 220 VTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTY 279
             +RP + L+ G  +  DL      +I  N RL+  ++  AP++I+ +   +LQ  ++  
Sbjct: 247 PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDAL 306

Query: 280 FDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINE 339
            DN   G       + RPL++LA  +KGK+GRFR NL GKRV++S R+VI+  P L +++
Sbjct: 307 LDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365

Query: 340 VGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKI 399
            G+PK +A EL  P                 G     G+   +K  +    +EE     I
Sbjct: 366 CGLPKKMALELFKP--------------FIYGKLELRGLATTIKAAKKMVEREEAVVWDI 411

Query: 400 TDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCV 459
            D              VI  H      VL NR P+LHR+ I A +  ++  +  + +  V
Sbjct: 412 LDE-------------VIREHP-----VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLV 453

Query: 460 CPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVL 519
           C  YNADFDGD+M VHVP + EA+ EA  LM+   +I+SP  G PII    D + G Y +
Sbjct: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513

Query: 520 TSSLFTKDEALTLLKSSGLNVELGEPDVIENNIEYYSG-KSLFSKTLPEGLSLQYRAKIC 578
           T            + + G  + L  P   E    Y SG  SL ++        +  A   
Sbjct: 514 TRD---------CVNAKGEGMVLTGPKEAER--LYRSGLASLHARVKVRITEYEKDANGE 562

Query: 579 KKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEA-GIVLNTLVKDFGSEDARLFLD 637
               T  K+     A + +   K L   I     G +A   +LNT  +  G +   +F D
Sbjct: 563 LVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFAD 622

Query: 638 AATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIVEKYENGTLESLPG 697
                        G + GIDD  IP    ++  +++++AE +V +I E++++G + +   
Sbjct: 623 QIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSGLVTA--- 675

Query: 698 RGVEESREAYIMQILGKARDQAGNVAEKYLSKE---------------NHAALMARTGAR 742
                 R   ++ I   A D+        L  E               N   +MA +GAR
Sbjct: 676 ----GERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731

Query: 743 GSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRSCYKKGLAPTE 802
           GS   I  +A   G  +   G +                        + + +++GL   +
Sbjct: 732 GSAAQIRQLAGMRGLMAKPDGSIIETP--------------------ITANFREGLNVLQ 771

Query: 803 YFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIRAEYDGTVRDSRGLVVQFEYGEDL 862
           YF    G R+GL D A++TA SGY+ RRLV+  QD+    D        ++     G D+
Sbjct: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV 831

Query: 863 VDPAK 867
            +P +
Sbjct: 832 KEPLR 836