Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1437 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  241 bits (614), Expect = 3e-67
 Identities = 242/908 (26%), Positives = 394/908 (43%), Gaps = 135/908 (14%)

Query: 13  ITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL---------------GVI 56
           +T  L SPE I   S  ++   +T +   Y P  GGL   R+                + 
Sbjct: 16  VTISLASPESILDSSHGEVTQPETINYRTYKPEMGGLFCERIFGPVKDWECHCGKYKRIR 75

Query: 57  DPGLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDI------------------- 94
             G++C  C   V          GHIEL  PV HI + K +                   
Sbjct: 76  YKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKIGYLLGLPTKKLDQIV 135

Query: 95  ----YKILK-AVCPHCGKVTITEIKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVC 149
               Y ++   +    G   +  +  DEYL+ M KL ++        + +L +       
Sbjct: 136 YYERYAVINPGIKAEDGLQYLDFLTEDEYLDIMDKLPKE--------NQMLDDDDPNKFI 187

Query: 150 PSCGEVKADV---KYDKPTAYHQLDGKAQKQLTSSEVREILEKIPAEDCKLLGINAKVAR 206
              G    ++   + D     + L  +A    +     E L+++   +           R
Sbjct: 188 AKMGAEAIEMLLSRLDLDDLSYSLRHQAATDTSQQRKAEALKRLKVVEAFRDARTRIENR 247

Query: 207 PEFMVLTVLPVPPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIE 266
           PE+MV+ ++PV P  +RP + L+ G  +  DL      +I  N RL+  I+  AP +I+ 
Sbjct: 248 PEWMVVRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAPEVILR 307

Query: 267 DLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSAR 326
           +   +LQ  +++ FDN    +   R    R L++L+  LKGK+GRFR NL GKRV++S R
Sbjct: 308 NEKRMLQEAVDSLFDNSRK-VNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGR 366

Query: 327 TVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVR 386
           +VI   P L ++E G+PK +A EL  P  +        R L+  G         +VK V+
Sbjct: 367 SVIVVGPELKLHECGLPKNMAAELFKPFII--------RKLIERG---------IVKTVK 409

Query: 387 TKDGKEEEYKIKITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVK 446
           +          KI D  KD  V +I + ++       G  VL NR P+LHR+ I A + K
Sbjct: 410 SAK--------KIVD-RKDPVVWDILENVL------KGHPVLLNRAPTLHRLGIQAFQPK 454

Query: 447 VLPYRTFRHNLCVCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPII 506
           ++  +  + +  VC  +NADFDGD+M VHVP   EA  EA  LML   +I++P  G PI 
Sbjct: 455 LIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLGHEAILEASTLMLSSHNILNPANGAPIT 514

Query: 507 GAIHDFISGAYVLTSSLFTKDEALTLLKSSGLNVELGEPDVIENNIEYYSGKSLFSKTLP 566
               D + G Y +T    + +E    +   G+    GE DVI          +L  K + 
Sbjct: 515 VPSQDMVLGLYYVTKGRRSTEE--EPVPGEGMTF-YGEEDVI---------IALNEKVIS 562

Query: 567 EGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLR--GVIDKNGFGSEAGIVLNTLV 624
           +   ++ + K+  +      +  E  A  +I N  +    G +++     +   ++  +V
Sbjct: 563 QHAYIKCKVKVRDENGELVDKIVETVAGRLIFNQFVPEEVGYVNELLTKKKLQQIIAEVV 622

Query: 625 KDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIV 684
           K  G   +  FLD    +  +     G + G++D  IP++       L+ KA+ +V+ + 
Sbjct: 623 KICGIARSAQFLDDIKHLGFQMAYAGGLSMGLNDVIIPSDK----DPLITKAKDEVDQVW 678

Query: 685 EKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE----NHAALMARTG 740
             Y       L G   +  R   ++ I  +      N+  K + ++    N   +M  +G
Sbjct: 679 NNY-------LMGLITDNERYNQVIDIWTRTNSNLTNILMKQMEEDKQGFNAIYMMMHSG 731

Query: 741 ARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRSCYKKGLAP 800
           ARGS   I  +          G R      ++ L    +GS+       + S +K+GL  
Sbjct: 732 ARGSREQIRQLG---------GMRGLMAKPQKNL----QGSVGEIIENPILSNFKEGLDV 778

Query: 801 TEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD--IRAEYDGTVRDSRGLVVQ-FE 857
            EYF    G R+GL D A++TA +GY+ RRLV+  QD  +  E  GT+   RGLVVQ  +
Sbjct: 779 LEYFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVSEEDCGTL---RGLVVQALK 835

Query: 858 YGEDLVDP 865
             +++V+P
Sbjct: 836 DNDEIVEP 843