Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1398 a.a., DNA-directed RNA polymerase subunit beta' from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  240 bits (613), Expect = 4e-67
 Identities = 245/907 (27%), Positives = 396/907 (43%), Gaps = 154/907 (16%)

Query: 13  ITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL---------------GVI 56
           I   L SPE+IR+ S  +I   +T +   + P   GL   R+                + 
Sbjct: 21  IKIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARIFGPTKDYECLCGKYKRMK 80

Query: 57  DPGLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAK---------------DIYKIL 98
             G++C+ C   V          GHI+L+ PV HI F K               D+ ++L
Sbjct: 81  YKGIICEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKSLPSRISLMLDMALKDVERVL 140

Query: 99  KAVCPHCGKVTITEIKRDEYL--EKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVK 156
                   +  +T +K+++ L  ++  + +E+ GD     D    E    +V      + 
Sbjct: 141 YFENYIVTEPGLTPLKQNQLLTEDEFYRYQEEFGD-----DGFTAEIGAEAVRNLLMGID 195

Query: 157 ADVKYDKPTAYHQLDGKAQKQLTSSEVREILEKIPAEDCKLLGINAKVARPEFMVLTVLP 216
            + + +K  A    +    K   +S+  +++E       K          PE+M+LT++P
Sbjct: 196 LNAEAEKHRAELADNPSEMKAKKASKRLKLIEAFLESGNK----------PEWMILTIVP 245

Query: 217 VPPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHI 276
           V P  +RP + L+ G  +  DL      +I  N RL+  +   AP++II +   +LQ  +
Sbjct: 246 VIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRMLQESV 305

Query: 277 NTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLS 336
           +  FDN   G       + RPL++LA  LKGK+GRFR NL GKRV++S R+VI+  P L 
Sbjct: 306 DALFDNGRRG-RVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVGPELK 364

Query: 337 INEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYK 396
           ++E G+PK +A EL       P+   ++ A          G++  VK+ +    +E+   
Sbjct: 365 LHECGLPKKMALEL-----FKPFIYARLDA---------KGLSGTVKQSKRMVEREQPAV 410

Query: 397 IKITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHN 456
             I D              VI  H      VL NR P+LHR+ I A + K++  +  R +
Sbjct: 411 WDILDE-------------VIREHP-----VLLNRAPTLHRLGIQAFEPKLIEGKAIRLH 452

Query: 457 LCVCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGA 516
             VC  +NADFDGD+M VHVP S EA+ EA  LM+   +I+SP  G PII    D + G 
Sbjct: 453 PLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPANGKPIIVPSQDIVLGL 512

Query: 517 YVLTSSLFTKDEALTLLKSSGLNVELGEPDVIENNIEYYSGKSLFSKTLPEGLSLQYRA- 575
           Y            L+L+K      E GE  +  N  E  +       TL   +  ++   
Sbjct: 513 YY-----------LSLVKDG----EPGEGKLFANIGEIDAALDAKVVTLHTRIKARWTEQ 557

Query: 576 -----KICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAGIVLNTLVKDFGSE 630
                ++ K  DT         A ++ RN  +   +++KN    E G +++ + +  G +
Sbjct: 558 DAEGNEVTKVIDTTPGR--MKLAALLPRNPNVGYRLLEKNLTKKEIGNLIDVVYRHCGQK 615

Query: 631 DARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIVEKYENG 690
              +F D    +  +     G + G DD  IPA+ ++ + +   +        VE+YE  
Sbjct: 616 ATVIFADQMMGLGFREAAKAGISFGKDDIVIPAKKVELVAETRTQ--------VEEYEQQ 667

Query: 691 TLESLPGRGVEESREAYIMQILGKARDQ-----AGNVAEKYLSKE------NHAALMART 739
             + L  RG + ++   ++    KA D+      G +A+  +  E      N   +MA +
Sbjct: 668 YADGLITRGEKYNK---VVDAWSKATDRIADAMMGEIAQPRVLIEGENPDINSVFMMANS 724

Query: 740 GARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRSCYKKGLA 799
           GARGS   +  +    G  +   G +                        + S +K+GL 
Sbjct: 725 GARGSQAQMKQLGGMRGLMAKPSGEIIETP--------------------ITSNFKEGLT 764

Query: 800 PTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD-IRAEYDGTVRDSRGLVVQ--F 856
             EYF    G R+GL D A++TA SGY+ RRLV+  QD I  E D     +RG+ ++   
Sbjct: 765 VLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDSIVTEQD--CGSTRGITLRAVM 822

Query: 857 EYGEDLV 863
           E G+ LV
Sbjct: 823 EGGDVLV 829