Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1402 a.a., DNA-directed RNA polymerase beta from Agrobacterium fabrum C58

 Score =  233 bits (593), Expect = 8e-65
 Identities = 238/883 (26%), Positives = 378/883 (42%), Gaps = 158/883 (17%)

Query: 13  ITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------------ 58
           I   + SPE+I + S  +I   +T +   + P   GL   R+ G I              
Sbjct: 21  IRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMK 80

Query: 59  --GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITEI 113
             G++C+ C   V          GHIEL+ PV HI F K +   +  +      +T+ ++
Sbjct: 81  YKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPSRISTLLD----MTLKDV 136

Query: 114 KRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYHQLDGK 173
           +R  Y E     E   G      + LL E          GE +          Y  L   
Sbjct: 137 ERVLYFENYIVTEP--GLTSLKQNQLLSEEEYMIAVDEFGEDQFTAMIGAEAIYEMLASM 194

Query: 174 AQKQLTSSEVREILEKIPAEDCKLLGINAKVA--------RPEFMVLTVLPVPPVTVRPS 225
             +++      E+ E       K      K+         RPE+M++ V+PV P  +RP 
Sbjct: 195 NLEKIAGDLRAELAETTSDLKQKKFMKRLKIVENFMESGNRPEWMIMKVVPVIPPDLRPL 254

Query: 226 ITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAP 285
           + L+ G  +  DL      +I  N RL+  I   AP +II +   +LQ  ++  FDN   
Sbjct: 255 VPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRMLQESVDALFDNGRR 314

Query: 286 GIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPKL 345
           G       + RPL++L+  LKGK+GRFR NL GKRV++S R+VI   P L +++ G+PK 
Sbjct: 315 G-RVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPELKLHQCGLPKK 373

Query: 346 IAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKITDANKD 405
           +A EL       P+   ++ A          G +  VK+ +    KE+           +
Sbjct: 374 MALEL-----FKPFIYARLDA---------KGYSSTVKQAKKLVEKEKP----------E 409

Query: 406 MWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNA 465
           +W  +I D ++ E        VL NR P+LHR+ I A +  ++  +  + +  VC  +NA
Sbjct: 410 VW--DILDEVIREHP------VLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNA 461

Query: 466 DFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLTSSLFT 525
           DFDGD+M VHVP S EA+ EA  LM+   +I+ P  G PII    D + G Y L  S+  
Sbjct: 462 DFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPANGHPIIVPSQDMVLGLYYL--SIMN 519

Query: 526 KDEALTLLKSSGLNVELGE-PDVIENNI-------------------------EYYSGKS 559
           ++E    +  S    ++GE    +EN +                         E   G+ 
Sbjct: 520 QNEPGEGMAFS----DIGELHHALENKVVTLHAKIRGRFKTVDADGKPVSKIHETTPGRM 575

Query: 560 LFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAGIV 619
           L  + LP+ +++ +        DTC +E              + +  I K         +
Sbjct: 576 LIGELLPKNVNVPF--------DTCNQE--------------MTKKNISK---------M 604

Query: 620 LNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQD 679
           ++T+ +  G +D  +F D   ++        G + G DD  IP   +        K   D
Sbjct: 605 IDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKV--------KIVGD 656

Query: 680 VEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALMART 739
            E +V++YE    + L  +G + ++   ++   GKA ++   VAE+ +++         T
Sbjct: 657 TEALVKEYEQQYNDGLITQGEKYNK---VVDAWGKATEK---VAEEMMARIKAVEFDPET 710

Query: 740 GARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGF-----VRSCY 794
           G +  + +I MM+ S  + S    R   G R           L AK  G      + S +
Sbjct: 711 GRQKPMNSIYMMSHSGARGSPNQMRQLGGMR----------GLMAKPSGEIIETPIISNF 760

Query: 795 KKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD 837
           K+GL   EYF    G R+GL D A++TA SGY+ RRLV+  QD
Sbjct: 761 KEGLTVNEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQD 803