Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1405 a.a., DNA-directed RNA polymerase subunit beta' from Acinetobacter radioresistens SK82

 Score =  238 bits (608), Expect = 1e-66
 Identities = 229/901 (25%), Positives = 378/901 (41%), Gaps = 176/901 (19%)

Query: 7   PKEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------ 58
           P E   I  GL SPE I++ S  ++   +T +   + P   GL   ++ G +        
Sbjct: 28  PVEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCG 87

Query: 59  --------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGK 107
                   G++C+ C   V T        GHIEL+ PV HI F K +   +  +      
Sbjct: 88  KYKRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLLD---- 143

Query: 108 VTITEIKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAY 167
           +T+ +I+R  Y E    + + G  P+     L  E    ++     E  A +  +   A 
Sbjct: 144 MTLRDIERVLYFESYV-VTDPGMTPFEKYQLLTDEEYYNALEEHGDEFTAKMGAE---AV 199

Query: 168 HQLDGKAQKQLTSSEVREILEKIPAEDCKLLGINAKVA----------RPEFMVLTVLPV 217
             L      +   S +RE + +  +E  KL   + ++           +PE+MV+ VLPV
Sbjct: 200 QDLLKDIDLEAEISRLREEIPQTTSET-KLKKASKRLKLMEAFKESNNKPEWMVMNVLPV 258

Query: 218 PPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHIN 277
            P  +RP + LE G  +  DL      +I  N RL+  ++  AP++I+ +   +LQ  ++
Sbjct: 259 LPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQESVD 318

Query: 278 TYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSI 337
              DN   G       + RPL++LA  +KGK+GRFR NL GKRV++S R+VI+  P L +
Sbjct: 319 ALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLRL 377

Query: 338 NEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKI 397
           ++ G+PK +A EL       P+   K++A                       G+    K 
Sbjct: 378 HQCGLPKKMALEL-----FKPFIFAKLQA----------------------SGQATTIK- 409

Query: 398 KITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNL 457
               A K M      +   +  H+     V+ NR P+LHR+ + A +  ++  +  R + 
Sbjct: 410 ----AAKKMVERETPEVWDVLAHVIRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHP 465

Query: 458 CVCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAY 517
            VC  +NADFDGD+M VHVP + EA+ EA  LM+   +I+SP  G PII    D + G Y
Sbjct: 466 LVCTAFNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 525

Query: 518 VLT-SSLFTKDEALTLLKSSGLNVELG--------------EPDVIENN---------IE 553
            +T  ++  K E +    +  +N  L                  +I  N         ++
Sbjct: 526 YITRDAVNAKGEGMVFADTHEVNRALATGQVAMHARVKARVHQTIINENGEREQQTIIVQ 585

Query: 554 YYSGKSLFSKTLPEGLSL-QYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGF 612
              G+ L  + +PEGLS  Q   ++ KK                                
Sbjct: 586 TTPGRCLLWEVVPEGLSFEQINVEMTKK-------------------------------- 613

Query: 613 GSEAGIVLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDL 672
                 ++N+  +  G +D  +F D    +  +     G + G++D  IP +     Q +
Sbjct: 614 --NISKLINSCYRKLGLKDTVIFADQLMYLGFRQATRSGVSVGMEDMVIPPQK----QAI 667

Query: 673 LNKAEQDVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLS---- 728
           ++KAE +V +I +++E G + +         R   ++ I  +  DQ        LS    
Sbjct: 668 IDKAETEVREIEQQFEQGFVTA-------GERYNKVVDIWARTNDQVAKAMMDNLSFVSV 720

Query: 729 -----------KENHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHF 777
                        N   +M+ +GARGS   I  +A   G  +   G +            
Sbjct: 721 TNREGQEEKQKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETP-------- 772

Query: 778 GKGSLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD 837
                       +++ +++GL   +YF    G R+GL D A++TA SGY+ RRLV+  QD
Sbjct: 773 ------------IKANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD 820

Query: 838 I 838
           +
Sbjct: 821 L 821