Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1387 a.a., DNA-directed RNA polymerase subunit beta from Rhodanobacter sp000427505 FW510-R12

 Score =  118 bits (296), Expect = 1e-30
 Identities = 87/301 (28%), Positives = 135/301 (44%), Gaps = 77/301 (25%)

Query: 361  GDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRMT--------IGQVLE 412
            GDK A RHG KGV+  +VP ED+PY  +G   D+ +NP  +PSRM         +G   +
Sbjct: 1106 GDKMAGRHGNKGVVSNVVPVEDMPYMANGEAVDICLNPLGVPSRMNIGQILEVHLGWAAK 1165

Query: 413  MIGGKVGSL--------ECRRI----------------------------------DGT- 429
             +G K+  +        E R+                                   +G  
Sbjct: 1166 GLGKKIQKMIEAQEKVAEIRKFLDQIYNSHVAGAVQHVDLKSLTDKEIFALATNLQEGVP 1225

Query: 430  ----IFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIFVGVAYYQKLHHLVAG 485
                +F G  E +++  L+        +  +YDG++G   +  + VG  +Y KL+HLV  
Sbjct: 1226 MATPVFDGAEETEIKAMLKLADLPESGQTMLYDGRTGEAFDRPVTVGYMHYLKLNHLVDD 1285

Query: 486  KIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDY 545
            K+HARS GP  ++T+QP  G+A+ GG RFGEME   L A+GAA  L+E L  +SD  +  
Sbjct: 1286 KMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQ-- 1343

Query: 546  VCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKL 605
                 G   ++               ++I D        +  +F +L+ E++S+ ID  L
Sbjct: 1344 -----GRNQMY---------------KNIVDGNHEMSAGMPESFNVLVKEIRSLAIDIDL 1383

Query: 606  E 606
            E
Sbjct: 1384 E 1384



 Score = 50.8 bits (120), Expect = 4e-10
 Identities = 39/178 (21%), Positives = 85/178 (47%), Gaps = 27/178 (15%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYP-GGQLDKFEVPE 262
           GQN ++A M + GYN ED+ ++++  ++     S          +    G +    ++P 
Sbjct: 827 GQNMLIAFMPWNGYNFEDSILLSERVVQEDRYTSIHIEELSCIARDTKLGAEEITADIPN 886

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEEQEITLQTK------- 315
            G      E+A   L + G++ + + VK+GD+++GK +P     E ++T + K       
Sbjct: 887 VG------EQALARLDESGIVYIGAEVKAGDIMVGKVTPK---GESQLTPEEKLLRAIFG 937

Query: 316 ---SQRRDTSVTIRHGEEG-IVDLVI-----LSETKEGNRLGKVRVRDLRIPEFGDKF 364
              S  +D+S+ +  G +G ++D+ +     + + K   ++ +  V+ +R  +  D+F
Sbjct: 938 EKASDVKDSSLRVPPGMDGTVIDVQVFTRDGIEKDKRAKQIEETEVKRVR-KDLDDQF 994