Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1358 a.a., DNA-directed RNA polymerase subunit beta from Xanthobacter sp. DMC5

 Score =  139 bits (350), Expect = 8e-37
 Identities = 99/311 (31%), Positives = 144/311 (46%), Gaps = 72/311 (23%)

Query: 346  RLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRM 405
            ++ KV V   R  + GDK A RHG KGV+  IVP ED+P+ EDG   D+++NP  +PSRM
Sbjct: 1068 KMVKVFVAVKRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTNVDIVLNPLGVPSRM 1127

Query: 406  TIGQV-----------------------------------LEMIGGK--VGSLECRRIDG 428
             +GQ+                                   LE I GK  +  L+   +  
Sbjct: 1128 NVGQILETHLGWACAGLGRQVAAAAEAYYARQDLKPVRDRLETIYGKEEIDQLKDSELPE 1187

Query: 429  T-------------IFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIFVGVAY 475
                          +F G  E  + + LE+ G +   +  ++DG++G   +  + VG  Y
Sbjct: 1188 LAENLRKGVPMATPVFDGAHEADIEQELERAGLDRSGQSTLFDGRTGEPFDRKVTVGYIY 1247

Query: 476  YQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERL 535
              KLHHLV  KIHARS GP  ++T+QP  G+A+ GG RFGEME   L A+GAA  L+E L
Sbjct: 1248 MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1307

Query: 536  LDESDPHEDYVCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDE 595
              +SD                D     K        ED  ++       I  +F +L+ E
Sbjct: 1308 TVKSD----------------DVAGRTKVYEAIVRGEDTFES------GIPESFNVLVKE 1345

Query: 596  LKSMGIDPKLE 606
            ++S+G++  LE
Sbjct: 1346 MRSLGLNVDLE 1356



 Score = 53.5 bits (127), Expect = 6e-11
 Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 16/139 (11%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLDKFEVPEK 263
           G+N +VA M + GYN ED+ ++++  ++  +  S     +E   +    G       PE+
Sbjct: 804 GRNVLVAFMPWNGYNFEDSILLSENIVKEDVFTSIHIEEFECMARDTKLG-------PEE 856

Query: 264 GVRGYR--AEEAYRNLGDDGLIDLESSVKSGDVILGKTSP----PRFLEE---QEITLQT 314
             R     +EEA +NL + G++ + + V++GD+++GK +P    P   EE   + I  + 
Sbjct: 857 ITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKGESPMTPEEKLLRAIFGEK 916

Query: 315 KSQRRDTSVTIRHGEEGIV 333
            +  RDTS+ +  G  G +
Sbjct: 917 AADVRDTSLRLPPGTTGTI 935