Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas simiae WCS417

 Score =  127 bits (320), Expect = 2e-33
 Identities = 90/298 (30%), Positives = 138/298 (46%), Gaps = 74/298 (24%)

Query: 361  GDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEM------- 413
            GDK A RHG KGV+ +I+P ED+P+  +G   D+++NP  +PSRM +GQ+LE        
Sbjct: 1080 GDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAK 1139

Query: 414  -----------------------------IGGKVGSLE----------CRRIDG------ 428
                                         IGG+   L+           + + G      
Sbjct: 1140 GLGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMAT 1199

Query: 429  TIFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIFVGVAYYQKLHHLVAGKIH 488
             +F G  E +++  L+        +  ++DG++G K E  + VG  Y  KL+HLV  K+H
Sbjct: 1200 PVFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMH 1259

Query: 489  ARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDYVCA 548
            ARS G   ++T+QP  G+A+ GG RFGEME   L A+GAA  L+E L  +SD        
Sbjct: 1260 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN----- 1314

Query: 549  KCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLE 606
              G   ++               ++I D        +  +F +L+ E++S+GID  LE
Sbjct: 1315 --GRTKMY---------------KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLE 1355



 Score = 41.2 bits (95), Expect = 3e-07
 Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 23/153 (15%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYP-GGQLDKFEVPE 262
           GQN  +A M++ G+N ED+  +++  ++     +   +      +    G +    ++P 
Sbjct: 802 GQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPN 861

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEEQEITLQTK------- 315
            G      E A   L + G++ + + V +GD+++GK +P     E ++T + K       
Sbjct: 862 VG------EAALNKLDEAGIVYVGAEVGAGDILVGKVTPK---GETQLTPEEKLLRAIFG 912

Query: 316 ---SQRRDTSVTIRHGEEG-IVDLVILSETKEG 344
              S  +DTS+ +  G +G ++D+ +   T++G
Sbjct: 913 EKASDVKDTSLRVPTGTKGTVIDVQVF--TRDG 943