Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1374 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Variovorax sp. SCN45

 Score =  135 bits (340), Expect = 1e-35
 Identities = 97/308 (31%), Positives = 145/308 (47%), Gaps = 85/308 (27%)

Query: 361  GDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEM------- 413
            GDK A RHG KGV+  IVP ED+P+  DG   D+ +NP  +PSRM +GQVLE+       
Sbjct: 1088 GDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCDICLNPLGVPSRMNVGQVLEVHLGWAGK 1147

Query: 414  -IGGKVGSL-------------------------ECRRIDGT------------------ 429
             IG ++G L                         E  ++  T                  
Sbjct: 1148 GIGQRIGDLLQQEAKVAELRKFMEQLYNGSGRPEELEQLSDTELLAMAANLQSGATFATP 1207

Query: 430  IFSGESEWKLREGLEKYGF-----------EHHAKEAMYDGKSGRKLECDIFVGVAYYQK 478
            +F G SE ++R G+ K  +           E   +  ++DG++G + E  + VG  ++ K
Sbjct: 1208 VFDGASEEEIR-GMLKLAYPDDIAKLKGLTETRTQAYLFDGRTGDQFERPVTVGYMHFLK 1266

Query: 479  LHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERLLDE 538
            LHHLV  K+HARS GP  ++T+QP  G+A+ GG RFGEME   L A+GAA +L+E L  +
Sbjct: 1267 LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLTVK 1326

Query: 539  SDPHEDYVCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKS 598
            SD  +       G   ++               E I          +  +F +L+ E++S
Sbjct: 1327 SDDVQ-------GRTKVY---------------ESIVKGEHSIEAGMPESFNVLVKEIRS 1364

Query: 599  MGIDPKLE 606
            +G+D +LE
Sbjct: 1365 LGLDIELE 1372



 Score = 46.2 bits (108), Expect = 9e-09
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 35/159 (22%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLDKFEVPEK 263
           GQN ++A M + GYN ED+ +I++  +                E RY    +++  V  +
Sbjct: 809 GQNMLIAFMPWNGYNFEDSILISERVVA---------------EDRYTSIHIEELVVMAR 853

Query: 264 GVR----------GYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSP-------PRFLE 306
             +             AE+    L + G+I + + V+ GD ++GK +P       P    
Sbjct: 854 DTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGETTLTPEEKL 913

Query: 307 EQEITLQTKSQRRDTSVTIRHGEEG-IVDLVILSETKEG 344
            + I  +  S  +DTS+ +  G +G ++D+ +   T+EG
Sbjct: 914 LRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVF--TREG 950