Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1385 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Sphingobium sp. HT1-2

 Score =  110 bits (274), Expect = 5e-28
 Identities = 80/255 (31%), Positives = 115/255 (45%), Gaps = 60/255 (23%)

Query: 346  RLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLII--------- 396
            ++ KV V   R  + GDK A RHG KG+I  I+P ED+P+ EDG   D ++         
Sbjct: 1072 KMVKVFVAVKRKLQPGDKMAGRHGNKGIISRILPAEDMPFLEDGTPVDFVLNPLGVPSRM 1131

Query: 397  ---------------------------------NPHAIPSRMTIGQVLEMIGGK--VGSL 421
                                             NP A      + ++L+ I G   V  +
Sbjct: 1132 NVGQIFETHLGWAARGLGAQIGQALDAWREANPNPEAGQPPEAVKELLKTIYGDNYVAEI 1191

Query: 422  ECRRIDGTI----------------FSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKL 465
            E R  +  +                F G  E  +   L+  G +   + +++DG++G   
Sbjct: 1192 EARSPEQIVELAQNVRAGVPMATPVFDGAVESDVSAMLKLAGLDESGQVSLFDGRTGDVF 1251

Query: 466  ECDIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAH 525
            +  + VG  Y  KLHHLV  KIHARS GP  ++T+QP  G+A+ GG RFGEME   L A+
Sbjct: 1252 DRKVTVGYKYVLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAY 1311

Query: 526  GAAMLLKERLLDESD 540
            GAA  L+E L  +SD
Sbjct: 1312 GAAYTLQEMLTVKSD 1326



 Score = 57.0 bits (136), Expect = 5e-12
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 14/144 (9%)

Query: 198 FDKRPAGQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLD- 256
           F +   G+N +VA M + GYN ED+ +I++  ++  +  S     +E   +    G  D 
Sbjct: 802 FGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIEEFEVMARDTKLGPEDI 861

Query: 257 KFEVPEKGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSP----PRFLEE---QE 309
             ++P  G      EEA RNL + G++ + + V+ GD+++GK +P    P   EE   + 
Sbjct: 862 TRDIPNVG------EEALRNLDEAGIVYIGAEVEPGDILVGKITPKGESPMTPEEKLLRA 915

Query: 310 ITLQTKSQRRDTSVTIRHGEEGIV 333
           I  +  S  RDTS+ +  G  G V
Sbjct: 916 IFGEKASDVRDTSLRLPPGVAGTV 939