Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1290 a.a., DNA-directed RNA polymerase subunit beta from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  157 bits (398), Expect = 2e-42
 Identities = 97/261 (37%), Positives = 140/261 (53%), Gaps = 22/261 (8%)

Query: 346  RLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRM 405
            +L KV +   R  + GDK A RHG KGV+  IV +ED+P+ EDG   D+++NP  +PSRM
Sbjct: 1052 QLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVREEDMPFLEDGTPMDIVLNPLGVPSRM 1111

Query: 406  TIGQVLEMIGGKVGSLECRRIDGTIFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKL 465
             IGQ+ E + G  G    R     IF G +E ++   L + G  H  +  ++DG SG + 
Sbjct: 1112 NIGQIYETVLGWAGLRLGRTYATPIFDGATEEQVSAELAEAGLPHFGRSYLFDGLSGDRF 1171

Query: 466  ECDIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAH 525
            +  + VGV Y  KL HLV  K+HARS GP  ++T+QP  G+A+ GG RFGEME   L A 
Sbjct: 1172 DQPVTVGVIYMLKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAF 1231

Query: 526  GAAMLLKERLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKI 585
            GA+ +L+E L  +SD   D +    G    +               E I     +P   I
Sbjct: 1232 GASNVLQEILTVKSD---DVI----GRAKAY---------------ESIVKGDVLPKPNI 1269

Query: 586  AYAFKLLLDELKSMGIDPKLE 606
              +F +L+ EL+ + ++  LE
Sbjct: 1270 PESFNVLIHELRGLALEITLE 1290



 Score = 55.8 bits (133), Expect = 1e-11
 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 7/99 (7%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLD-KFEVPE 262
           G+N  VA M ++GYN EDA +I++  +   +  S     +E   +    G+ +   E+P 
Sbjct: 763 GRNLQVAFMPWQGYNFEDAIVISEKVVRDDVFTSIHIEEFELEVRETKRGEEELTSEIPN 822

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSP 301
                  +EEA RNL ++G+I + + V+ GD+++GK +P
Sbjct: 823 V------SEEAVRNLDENGIIRIGAEVREGDILIGKITP 855



 Score = 42.0 bits (97), Expect = 2e-07
 Identities = 53/225 (23%), Positives = 81/225 (36%), Gaps = 66/225 (29%)

Query: 92  LVNSGIIEYLDAEEEENARIAMYEDEITEEN-----------------------THVEID 128
           +V  G +EYL AEEE+   IA     I E+                        T++++ 
Sbjct: 560 VVVDGSVEYLTAEEEDTHHIAQANAIIDEDGNFINPTVKGRFEGDFPVEAPNTYTYMDVA 619

Query: 129 PLVILGIGAGVAPYPEHNSAPRITMAAAMSKQSLGIPMANIKWRMDTRGHLLHYPQVPLV 188
           P  I+ + A + P+ EH+ A R  M + M +Q+  +P+                PQ P+V
Sbjct: 620 PNQIVSVAASLIPFLEHDDANRALMGSNMQRQA--VPLLK--------------PQAPIV 663

Query: 189 RTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEK 248
            T  +     D R        A++  EG  + D    NK  ++  L          SF+ 
Sbjct: 664 GTGLEGRAAIDSR--------ALVIAEGEGVIDFVDANKIVVKYDLTHE---EKLVSFDA 712

Query: 249 RYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESSVKSGD 293
            Y    L KF                R    D  I+L   VK G+
Sbjct: 713 EYVTYNLIKF----------------RRTNQDTCINLTPLVKKGE 741