Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1391 a.a., DNA-directed RNA polymerase subunit beta from Magnetospirillum magneticum AMB-1

 Score =  133 bits (335), Expect = 4e-35
 Identities = 90/250 (36%), Positives = 121/250 (48%), Gaps = 55/250 (22%)

Query: 346  RLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRM 405
            ++ KV V   R  + GDK A RHG KGVI  IVP ED+PY EDG   D+++NP  +PSRM
Sbjct: 1094 KMVKVFVAVKRKLQPGDKMAGRHGNKGVISRIVPLEDMPYLEDGQQVDIVLNPLGVPSRM 1153

Query: 406  TIGQVLEM--------IGGKVGSL--ECRRIDGTI------------------------- 430
             +GQ+LE         +G ++G +  + +R   TI                         
Sbjct: 1154 NVGQILETHLGWACAGLGQQIGGMLDKYKRNAATIIDLKSKLKDVYGDAIYEDEIAGLAD 1213

Query: 431  --------------------FSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIF 470
                                F G  E  +   L K G     +  + DG++G   +  + 
Sbjct: 1214 NEITELAHNLTPGVPIATPVFDGARESDIVAMLTKAGRSSSGQVTLVDGRTGEPFDRKVT 1273

Query: 471  VGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAML 530
            VG  Y  KLHHLV  KIHARS GP  ++T+QP  G+A+ GG RFGEME   L A+GAA  
Sbjct: 1274 VGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1333

Query: 531  LKERLLDESD 540
            L+E L  +SD
Sbjct: 1334 LQEMLTVKSD 1343



 Score = 58.2 bits (139), Expect = 2e-12
 Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 15/145 (10%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLD-KFEVPE 262
           G+N +VA M + GYN ED+ +I++  +   +  S     +E   +    GQ +   ++P 
Sbjct: 830 GRNVLVAFMPWNGYNFEDSILISERIVRDDVFTSIHIEEFEVMARDTKLGQEEITRDIPN 889

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSP----PRFLEE---QEITLQTK 315
            G      EEA +NL + G++ + + VK GD+++GK +P    P   EE   + I  +  
Sbjct: 890 VG------EEALKNLDEAGIVYIGAEVKPGDILVGKVTPKGESPMTPEEKLLRAIFGEKA 943

Query: 316 SQRRDTSVTIRHGEEG-IVDLVILS 339
           S  RDTS+ +  G  G IV++ + S
Sbjct: 944 SDVRDTSLRLPPGVSGTIVEVRVFS 968