Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta RpoB from Escherichia coli ECRC62

 Score =  134 bits (336), Expect = 3e-35
 Identities = 101/301 (33%), Positives = 144/301 (47%), Gaps = 78/301 (25%)

Query: 361  GDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEM------- 413
            GDK A RHG KGVI  I P ED+PY E+G   D+++NP  +PSRM IGQ+LE        
Sbjct: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122

Query: 414  -IGGKVGSL-----------------------ECRRIDGTIFSGESEWKLREGLEKYGFE 449
             IG K+ ++                         +++D + FS E   +L E L K G  
Sbjct: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK-GMP 1181

Query: 450  ------HHAKEA------------------MYDGKSGRKLECDIFVGVAYYQKLHHLVAG 485
                    AKEA                  +YDG++G + E  + VG  Y  KL+HLV  
Sbjct: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241

Query: 486  KIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDY 545
            K+HARS G   ++T+QP  G+A+ GG RFGEME   L A+GAA  L+E L  +SD     
Sbjct: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN-- 1299

Query: 546  VCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKL 605
                 G   ++                 +  N ++ P  +  +F +LL E++S+GI+ +L
Sbjct: 1300 -----GRTKMY--------------KNIVDGNHQMEP-GMPESFNVLLKEIRSLGINIEL 1339

Query: 606  E 606
            E
Sbjct: 1340 E 1340



 Score = 44.7 bits (104), Expect = 3e-08
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 26/176 (14%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYP-GGQLDKFEVPE 262
           GQN  VA M + GYN ED+ ++++  ++     +   +      +    G +    ++P 
Sbjct: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEEQEITLQTK------- 315
            G      E A   L + G++ + + V  GD+++GK +P     E ++T + K       
Sbjct: 857 VG------EAALSKLDESGIVYIGAEVTGGDILVGKVTPK---GETQLTPEEKLLRAIFG 907

Query: 316 ---SQRRDTSVTIRHGEEG-IVDLVILSETKEGNRLGKVRVRDLRIPEFGDKFASR 367
              S  +D+S+ + +G  G ++D+ +   T++G    K   R L I E   K A +
Sbjct: 908 EKASDVKDSSLRVPNGVSGTVIDVQVF--TRDGVEKDK---RALEIEEMQLKQAKK 958



 Score = 37.0 bits (84), Expect = 6e-06
 Identities = 45/177 (25%), Positives = 65/177 (36%), Gaps = 35/177 (19%)

Query: 19  DPETLVKNLRENRRSGKLSPS--TSISFNEESNDVHISTDGGRAVRPLIVVENGASKVTE 76
           D    +  +   RR   L P   T      E  DVH  T  GR V P+   E     +  
Sbjct: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVH-PTHYGR-VCPIETPEGPNIGLIN 573

Query: 77  EILEKMESKELTFLDL----VNSGI----IEYLDAEEEENARIAMYEDEITEENTHVE-- 126
            +    ++ E  FL+     V  G+    I YL A EE N  IA     + EE   VE  
Sbjct: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633

Query: 127 ---------------------IDPLVILGIGAGVAPYPEHNSAPRITMAAAMSKQSL 162
                                +    ++ +GA + P+ EH+ A R  M A M +Q++
Sbjct: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690