Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta from Dickeya dianthicola ME23

 Score =  131 bits (330), Expect = 2e-34
 Identities = 98/300 (32%), Positives = 142/300 (47%), Gaps = 76/300 (25%)

Query: 361  GDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEM------- 413
            GDK A RHG KGVI  I P ED+PY E+G   D+++NP  +PSRM IGQ+LE        
Sbjct: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122

Query: 414  -IGGKVGSL-----------------------ECRRIDGTIFSGESEWKLREGLEKY--- 446
             IG K+ ++                         +++D   FS E   +L E L+K    
Sbjct: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGNDVRQKVDLNTFSDEEVLRLAENLKKGMPI 1182

Query: 447  -------GFEHHAKE-------------AMYDGKSGRKLECDIFVGVAYYQKLHHLVAGK 486
                     E+  KE              ++DG++G + E  + VG  Y  KL+HLV  K
Sbjct: 1183 ATPVFDGAKENEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242

Query: 487  IHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDYV 546
            +HARS G   ++T+QP  G+A+ GG RFGEME   L A+GAA  L+E L  +SD      
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN--- 1299

Query: 547  CAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLE 606
                G   ++               ++I D        +  +F +LL E++S+GI+ +LE
Sbjct: 1300 ----GRTKMY---------------KNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELE 1340



 Score = 45.1 bits (105), Expect = 2e-08
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 26/176 (14%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYP-GGQLDKFEVPE 262
           GQN  VA M + GYN ED+ ++++  ++     +   +      +    G +    ++P 
Sbjct: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEEQEITLQTK------- 315
            G      E A   L + G++ + + V  GD+++GK +P     E ++T + K       
Sbjct: 857 VG------EAALSKLDESGIVYIGAEVTGGDILVGKVTPK---GETQLTPEEKLLRAIFG 907

Query: 316 ---SQRRDTSVTIRHGEEG-IVDLVILSETKEGNRLGKVRVRDLRIPEFGDKFASR 367
              S  +D+S+ + +G  G I+D+ +   T++G    K   R L I E   K A +
Sbjct: 908 EKASDVKDSSLRVPNGVSGTIIDVQVF--TRDGVEKDK---RALEIEEMQLKQAKK 958



 Score = 35.0 bits (79), Expect = 2e-05
 Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 35/177 (19%)

Query: 19  DPETLVKNLRENRRSGKLSPS--TSISFNEESNDVHISTDGGRAVRPLIVVENGASKVTE 76
           D    +  +   RR   L P   T      E  DVH  T  GR V P+   E     +  
Sbjct: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVH-PTHYGR-VCPIETPEGPNIGLIN 573

Query: 77  EILEKMESKELTFLDL----VNSGI----IEYLDAEEEENARIAMYEDEITEENTHVE-- 126
            +    ++ E  FL+     V  G+    I YL A EE N  IA     + +E   +E  
Sbjct: 574 SLSVYAQTNEYGFLETPYRRVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFIEEL 633

Query: 127 ---------------------IDPLVILGIGAGVAPYPEHNSAPRITMAAAMSKQSL 162
                                +    ++ +GA + P+ EH+ A R  M A M +Q++
Sbjct: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690