Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1291 a.a., DNA-directed RNA polymerase, beta subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  154 bits (390), Expect = 2e-41
 Identities = 93/261 (35%), Positives = 139/261 (53%), Gaps = 22/261 (8%)

Query: 346  RLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRM 405
            RL KV V   R  + GDK A RHG KG++  IV  ED+P+ EDG   D+++NP  +PSRM
Sbjct: 1053 RLAKVYVAKKRKLKVGDKMAGRHGNKGIVAKIVRDEDMPFLEDGTPMDIVLNPLGVPSRM 1112

Query: 406  TIGQVLEMIGGKVGSLECRRIDGTIFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKL 465
             IGQ+ E +    G    ++    IF G S  ++   L+  G     +  ++DG +G++ 
Sbjct: 1113 NIGQIFETVLAWAGEKMNKKYATPIFDGASTEEVAAELDAAGLPSFGRTYLFDGLTGKQF 1172

Query: 466  ECDIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAH 525
            +  + VG+AY  KL HLV  K+HARS GP  ++T+QP  G+A+ GG RFGEME   L A 
Sbjct: 1173 DQPVTVGIAYMLKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAF 1232

Query: 526  GAAMLLKERLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKI 585
            GA+ +L+E L  +SD   D +    G    +               E I     +P   I
Sbjct: 1233 GASHVLQEILTVKSD---DVI----GRAKAY---------------ESIVKGENLPKPNI 1270

Query: 586  AYAFKLLLDELKSMGIDPKLE 606
              +F +L+ EL+ + ++  L+
Sbjct: 1271 PESFNVLVHELRGLALEITLD 1291



 Score = 54.3 bits (129), Expect = 3e-11
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 7/99 (7%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLD-KFEVPE 262
           G+N  VA M ++GYN EDA +I++  +   +  S     ++   +    G+ +   E+P 
Sbjct: 764 GKNLKVAYMPWQGYNFEDAIVISERVVREDIFTSIHVEEFQLEVRDTKRGEEELTSEIPN 823

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSP 301
                  +EEA +NL ++G+I + + +K GD+I+GK +P
Sbjct: 824 V------SEEAVKNLDENGIIRIGAELKEGDIIIGKITP 856



 Score = 33.9 bits (76), Expect = 4e-05
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 23/88 (26%)

Query: 98  IEYLDAEEEENARIAM-------------------YEDEI----TEENTHVEIDPLVILG 134
           I +L AEEE+N  IA                    YE +      +E +++++ P  I+ 
Sbjct: 567 IVFLTAEEEDNNNIAQANAPLETDGSFVNDRVKARYEGDFPVLEPKEISYMDVAPNQIVS 626

Query: 135 IGAGVAPYPEHNSAPRITMAAAMSKQSL 162
           + A + P+ EH+ A R  M + M +Q++
Sbjct: 627 VAASLIPFLEHDDANRALMGSNMQRQAV 654