Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1371 a.a., DNA-directed RNA polymerase subunit beta from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  136 bits (342), Expect = 7e-36
 Identities = 89/245 (36%), Positives = 122/245 (49%), Gaps = 50/245 (20%)

Query: 346  RLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRM 405
            ++ KV V   R  + GDK A RHG KGVI  I+P ED+P+ EDG   D+++NP  +PSRM
Sbjct: 1081 KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKILPIEDMPHLEDGTHVDVVLNPLGVPSRM 1140

Query: 406  TIGQVLEM--------IGGKV-GSLECRRIDGT--------------------------- 429
             IGQ+ E         +G ++ G LE  +  G                            
Sbjct: 1141 NIGQIFETHLGWAAAGLGKQISGLLEAWQAGGQKQALIDRLTHIYGEETPLPQDEEELIE 1200

Query: 430  --------------IFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIFVGVAY 475
                          +F G     +   LE+ G    A+  +YDG++G + +  + VG  Y
Sbjct: 1201 LAKNLSKGVPFATPVFDGAHIGDIERLLEEAGLNKSAQSILYDGQTGEQFKRPVTVGYIY 1260

Query: 476  YQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERL 535
              KLHHLV  KIHARS GP  ++T+QP  G+A+ GG RFGEME   L A+GAA  L+E L
Sbjct: 1261 MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1320

Query: 536  LDESD 540
              +SD
Sbjct: 1321 TVKSD 1325



 Score = 58.9 bits (141), Expect = 1e-12
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 28/178 (15%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLD-KFEVPE 262
           G+N +VA M + GYN ED+ +I++  +   +  S     +E   +    G  +   ++P 
Sbjct: 818 GRNALVAFMPWNGYNFEDSILISERIVRDDVFTSIHLEEFEVAARDTKLGPEEITRDIPN 877

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSP----PRFLEE---QEITLQTK 315
            G      EEA RNL + G++ + + V+ GD+++GK +P    P   EE   + I  +  
Sbjct: 878 VG------EEALRNLDEAGIVAIGAEVQPGDILVGKVTPKGESPMTPEEKLLRAIFGEKA 931

Query: 316 SQRRDTSVTIRHGEEG-IVDLVILS-------------ETKEGNRLGKVRVRDLRIPE 359
           S  RDTS+ +  G  G IVD+ + +             E  E  RLGK R  +L+I E
Sbjct: 932 SDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERAMAIERAEIERLGKDRDDELKILE 989