Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta from Alteromonas macleodii MIT1002

 Score =  132 bits (332), Expect = 1e-34
 Identities = 96/301 (31%), Positives = 141/301 (46%), Gaps = 75/301 (24%)

Query: 361  GDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEM------- 413
            GDK A RHG KGVI  I P ED+PY  +G   D+++NP  +PSRM IGQ+LE        
Sbjct: 1064 GDKMAGRHGNKGVISTIQPVEDMPYDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAH 1123

Query: 414  -IGGKVGSL-----------------------------------ECRRIDGT-------- 429
             +G K+  +                                   E RR+           
Sbjct: 1124 GLGVKIDRMIKEQRELAELRDFLKKVYELGENHQEVDIDSFTDHEVRRLAENLRKGVPVA 1183

Query: 430  --IFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIFVGVAYYQKLHHLVAGKI 487
              +F G  E +++E L+        + A++DG++GR+ E  + VG  Y  KL+HLV  K+
Sbjct: 1184 TPVFDGARESEIKEMLKLADIPESGQIALFDGRTGREFERPVTVGYMYMLKLNHLVDDKM 1243

Query: 488  HARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDYVC 547
            HARS G   ++T+QP  G+A+ GG RFGEME   L A+GAA  L+E L  +SD       
Sbjct: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN---- 1299

Query: 548  AKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLEL 607
               G   ++               ++I D        +  +F +LL E++S+GI+ +LE 
Sbjct: 1300 ---GRTKMY---------------KNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEE 1341

Query: 608  K 608
            K
Sbjct: 1342 K 1342



 Score = 45.8 bits (107), Expect = 1e-08
 Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 25/168 (14%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLD-KFEVPE 262
           GQN  +A M + GYN ED+ +I++   +     +   +      +    G  +   ++P 
Sbjct: 798 GQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGPEEISSDIPN 857

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEEQEITLQTK------- 315
            G      E A   L + G++ + + VK GD+++GK +P     E ++T + K       
Sbjct: 858 VG------ESALSKLDESGVVYIGAEVKGGDILVGKVTPK---GETQLTPEEKLLRAIFG 908

Query: 316 ---SQRRDTSVTIRHGEEG-IVDLVILSETKEGNRLGK--VRVRDLRI 357
              S  +DTS+ + +   G ++D+ +   T++G    K  + + D+++
Sbjct: 909 EKASDVKDTSLRVPNSVHGTVIDVQVF--TRDGVEKDKRALEIEDMQL 954