Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1378 a.a., DNA-directed RNA polymerase beta chain from Agrobacterium fabrum C58

 Score =  138 bits (348), Expect = 1e-36
 Identities = 89/248 (35%), Positives = 122/248 (49%), Gaps = 53/248 (21%)

Query: 346  RLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRM 405
            ++ KV V   R  + GDK A RHG KGV+  IVP ED+P+ EDG   D+ +NP  +PSRM
Sbjct: 1070 KMVKVFVAVKRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRM 1129

Query: 406  TIGQVLEM--------IGGKVGSL---------------------------ECRRIDGT- 429
             +GQ+LE         +G K+G +                           E +R D   
Sbjct: 1130 NVGQILETHLAWACAGMGKKIGEMLEEYRKTMDISELRSELTEIYASEANDEVQRFDDDS 1189

Query: 430  -----------------IFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIFVG 472
                             +F G  E  +   L+K G     +  +YDG++G   +  + VG
Sbjct: 1190 LVKLAEEAKRGVSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVG 1249

Query: 473  VAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLK 532
              Y  KL+HLV  KIHARS GP  ++T+QP  G+A+ GG RFGEME   L A+GAA  L+
Sbjct: 1250 YMYMIKLNHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1309

Query: 533  ERLLDESD 540
            E L  +SD
Sbjct: 1310 EMLTVKSD 1317



 Score = 50.1 bits (118), Expect = 6e-10
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 16/139 (11%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLDKFEVPEK 263
           G+N +VA M + GYN ED+ ++++  +   +  S     +E   +    G       PE+
Sbjct: 806 GRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSIHIEEFEVMARDTKLG-------PEE 858

Query: 264 GVRGYR--AEEAYRNLGDDGLIDLESSVKSGDVILGKTSP----PRFLEE---QEITLQT 314
             R     +EEA +NL + G++ + + V+ GD+++GK +P    P   EE   + I  + 
Sbjct: 859 ITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEK 918

Query: 315 KSQRRDTSVTIRHGEEGIV 333
            S  RDTS+ +  G  G +
Sbjct: 919 ASDVRDTSMRMPPGTFGTI 937