Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1362 a.a., DNA-directed RNA polymerase subunit beta from Acinetobacter radioresistens SK82

 Score =  136 bits (342), Expect = 7e-36
 Identities = 132/462 (28%), Positives = 202/462 (43%), Gaps = 102/462 (22%)

Query: 209  VAVMSYEGYNMED-AFIINKASLERGLGRSSFFRSYESFEK--RYPGGQLDKFEVPEKGV 265
            V V + +G   +D A  I KA L+    R      Y+ FE+  R    +L K +V   G 
Sbjct: 940  VQVFTRDGLEKDDRALAIEKAQLDAY--RKDLKEEYKIFEEAARERIVRLLKDQVSNGGG 997

Query: 266  RGYRAEEAYRNLGDD-GLIDLESSVKSGDVILGK-TSPPRFLEEQEITLQTK----SQRR 319
               R E+    L     LIDL     S + I  + T    FL+E+   +  K     ++ 
Sbjct: 998  NTKRGEKLSEELLSGLELIDLLEIQPSDEAIAERLTQIQVFLKEKSTEIDEKFAEKKRKL 1057

Query: 320  DTSVTIRHGEEGIVDLVILSETKEGNRLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVP 379
             T   + HG   +V               KV +   R  + GDK A RHG KGV+  I+P
Sbjct: 1058 STGDELTHGVLKVV---------------KVYLAVKRRIQPGDKMAGRHGNKGVVSQILP 1102

Query: 380  QEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEM-------------------------- 413
             ED+P+  +GV  D+++NP  +PSRM +GQ+LE                           
Sbjct: 1103 VEDMPHDANGVPVDVVLNPLGVPSRMNVGQILETHLGLAAKGLGEQIDKMLKQQRAIAEL 1162

Query: 414  ----------IGGKVGSL------ECRRIDGT----------IFSGESEWKLREGLEKYG 447
                      +GG+   L      E  ++ G           +F G  E +++E LE   
Sbjct: 1163 RDFLDKIYNKVGGEQEQLDTLTDDEILKLAGNLSKGVPLATPVFDGAEEGQIKELLELAE 1222

Query: 448  FEHHAKEAMYDGKSGRKLECDIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRA 507
                 ++ ++DG++G + +  + VG  Y  KL+HLV  K+HARS G   ++T+QP  G+A
Sbjct: 1223 LPRSGQQILFDGRTGEQFDRPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1282

Query: 508  REGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCPV 567
            + GG RFGEME   L A+GAA  L+E L  +SD  E       G   I+           
Sbjct: 1283 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVE-------GRTRIY----------- 1324

Query: 568  CGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLELKD 609
                ++I D        +  +F +L  E++S+GI+  +ELK+
Sbjct: 1325 ----KNIVDGNHYMDPGMPESFNVLTKEIRSLGIN--IELKN 1360



 Score = 47.0 bits (110), Expect = 5e-09
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 23/153 (15%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYP-GGQLDKFEVPE 262
           GQN  VA M++ GYN ED+ ++++  L+     S   +      +    G +    ++P 
Sbjct: 806 GQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSIHIQELSCVARDTKLGAEEITADIPN 865

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEEQEITLQTKSQR---- 318
            G      E A   L + G++ + + V +GD+++GK +P     E ++T + K  R    
Sbjct: 866 VG------EAALSKLDESGIVYIGAEVTAGDILVGKVTPK---GETQLTPEEKLLRAIFG 916

Query: 319 ------RDTSVTIRHGEEG-IVDLVILSETKEG 344
                 +D+S+ +  G +G ++D+ +   T++G
Sbjct: 917 EKAADVKDSSLRVPSGTKGTVIDVQVF--TRDG 947



 Score = 33.9 bits (76), Expect = 5e-05
 Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 35/177 (19%)

Query: 19  DPETLVKNLRENRRSGKLSPS--TSISFNEESNDVHISTDGGRAVRPLIVVENGASKVTE 76
           D    +  +   RR   L P   T      E  DVH  T  GR V P+   E     +  
Sbjct: 525 DQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVH-QTHYGR-VCPIETPEGPNIGLIN 582

Query: 77  EILEKMESKELTFLD-----LVNSGI---IEYLDAEEEENARIAM--------------- 113
            +    ++ E  FL+     +V+  +   +EYL A EE    IA                
Sbjct: 583 SLSVYAKTNEFGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSALDKDGYLTEEL 642

Query: 114 ----YEDEIT----EENTHVEIDPLVILGIGAGVAPYPEHNSAPRITMAAAMSKQSL 162
               Y+ E      E  TH+++    ++ + A + P+ EH+ A R  M + M +Q++
Sbjct: 643 VSVRYQGEFVRMAPERITHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAV 699