Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1374 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Variovorax sp. SCN45

 Score = 86.3 bits (212), Expect = 7e-21
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 29/223 (13%)

Query: 266 TEDALEHIGKRVAPGQPKEYKLKRAETILCNYLLPH------MGVESEKLGAKCKYLGRM 319
           TEDA++ + +R+    P  Y L R   +  N  +        M + +E + A  K L   
Sbjct: 389 TEDAVQALFQRLFYN-PDTYDLSRVGRMKFNAKVGRDESTGPMVLTNEDILAVVKIL--- 444

Query: 320 AKNSIELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKE 379
               ++L  G    DD DH  N+R++  G+L E+ +R    ++ K +K   ER     +E
Sbjct: 445 ----VDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLARIEKAVK---ERLGQAEQE 497

Query: 380 PSI-QAAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PL 434
           P +    + S  ++  ++          G + +SQ +D+T+ L+ ++  RRV +     L
Sbjct: 498 PLMPHDLINSKPISAALKEFF-------GASQLSQFMDQTNPLSEITHKRRVSALGPGGL 550

Query: 435 SRSQPHFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKV 477
           +R +  FE RD+H T +G++CP ETPEGPN GL+ +LA+  ++
Sbjct: 551 TRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARL 593



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 40/163 (24%)

Query: 78  EARIRNLAYSAPLYLEMIPTVGEGE----EEKVLSPV---EVYIGELPVMLGSEICHLCG 130
           E + R L +++ +  ++   + + E    + KV+  V   EVY+GE+P+M          
Sbjct: 92  ECQTRGLTFASAVRAKVQLIIYDRESSTSQSKVVKEVKEQEVYMGEVPLMTDK------- 144

Query: 131 KSAEELIKYGEDTQDPLGYFIVNGSEKAVVAQEDLIPNRIICE----KVEKNNKVVDIAK 186
                            G FI+NG+E+ +V+Q    P  +  E    K   + K++  A+
Sbjct: 145 -----------------GSFIINGTERVIVSQLHRSPG-VFFEHDKGKTHSSGKLLFSAR 186

Query: 187 VFSTRHGFRALCTVERNPDGLLNVSFPGMPSTIPLVILMRALG 229
           V   R  +      E +P  +L          +P+ IL++A+G
Sbjct: 187 VIPYRGSW---LDFEFDPKDMLYFRV-DRRRKMPVTILLKAIG 225