Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1385 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Sphingobium sp. HT1-2

 Score = 84.3 bits (207), Expect = 2e-20
 Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 14/200 (7%)

Query: 282 PKEYKLKRAETILCNYLLPHMGVESEKLGAKCKYLGRMAKNSIELYLGLRVEDDKDHYSN 341
           P+ Y L     +  N  L  +  E      + + +  + K  + L  G    DD D+  N
Sbjct: 404 PERYDLSAVGRVKMNMRLD-LDAEDTVTTLRVEDILAVVKELVNLKDGKGEIDDIDNLGN 462

Query: 342 KRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHAMAT 401
           +R++  G+L+E+ +R    ++ + +K ++    +    P+       D++  +   A+A 
Sbjct: 463 RRVRSVGELLENQYRVGLLRMERAVKERMSSVDVSTVMPN-------DLINAKP--AVAA 513

Query: 402 GNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PLSRSQPHFEARDLHATQWGKICPS 457
                G + +SQ +D+T+ L+ V+  RRV +     L+R +  FE RD+H T +G+ICP 
Sbjct: 514 VREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPI 573

Query: 458 ETPEGPNCGLVKNLAVMCKV 477
           ETPEGPN GL+ +LA   +V
Sbjct: 574 ETPEGPNIGLINSLATFSRV 593



 Score = 36.6 bits (83), Expect = 6e-06
 Identities = 53/243 (21%), Positives = 104/243 (42%), Gaps = 43/243 (17%)

Query: 15  SLVKHHIDSYDDFVKNKIQRIIDEVTGVETEIKGGYKV-SFGNVRVTKPINKEADGSVKP 73
           +L++   +SY+ F+++     I  V+G+E  ++  + +  F        ++ E +     
Sbjct: 32  NLIEVQRESYEQFLRSN--PAIGYVSGLEKTLRSVFPIRDFAGTAEMDFVHYELEDPKFD 89

Query: 74  ITPMEARIRNLAYSAPLYLEMIPTVGEGEEEKVLSPV------EVYIGELPVMLGSEICH 127
           +   E R R + Y+AP+ + +   V E + +     V      +VY+G++P+M       
Sbjct: 90  VE--ECRQRGITYAAPMRVTLRLIVFEVDADTETRSVLDIKEQDVYMGDMPLM------- 140

Query: 128 LCGKSAEELIKYGEDTQDPLGYFIVNGSEKAVVAQEDLIPNRIICE---KVEKNNKVVDI 184
                          TQ+  G FIVNG+E+ +V+Q    P  +      K   + K +  
Sbjct: 141 ---------------TQN--GTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFA 183

Query: 185 AKVFSTRHGFRALCTVERNPDGLLNVSFPGMPSTIPLVILMRALGAESDREIIELISDEP 244
           A+V   R  +      E +   ++NV        +P+  L+ ALG  ++ EI+    ++ 
Sbjct: 184 ARVIPYRGSW---LDFEFDAKDIVNVRI-DRKRKLPVTALLYALGLTAE-EILGQFYNKV 238

Query: 245 TVV 247
           T V
Sbjct: 239 TFV 241