Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1368 a.a., DNA-directed RNA polymerase subunit beta from Paraburkholderia sabiae LMG 24235

 Score = 87.0 bits (214), Expect = 4e-21
 Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 13/154 (8%)

Query: 324 IELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQ 383
           +EL  G    DD DH  N+R++  G+L E+ FR    ++ + +K +L +    N  P   
Sbjct: 439 VELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQAESENLMP--H 496

Query: 384 AAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PLSRSQP 439
             + S  ++  +R          G + +SQ +D+T+ L+ ++  RRV +     L+R + 
Sbjct: 497 DLINSKPISSAIREFF-------GSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERA 549

Query: 440 HFEARDLHATQWGKICPSETPEGPNCGLVKNLAV 473
            FE RD+H T +G++CP ETPEGPN GL+ +LA+
Sbjct: 550 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAL 583



 Score = 30.0 bits (66), Expect = 6e-04
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 39/138 (28%)

Query: 96  PTVGEGEEEKVLSPVEVYIGELPVMLGSEICHLCGKSAEELIKYGEDTQDPLGYFIVNGS 155
           P V E +E+      EVY+GE+P+M                         P G F++NG+
Sbjct: 117 PVVKEVKEQ------EVYMGEIPLMT------------------------PTGSFVINGT 146

Query: 156 EKAVVAQEDLIPNRIICE----KVEKNNKVVDIAKVFSTRHGFRALCTVERNPDGLLNVS 211
           E+ +V+Q    P  +  E    K   + K++  A++   R  +      E +P  +L   
Sbjct: 147 ERVIVSQLHRSPG-VFFEHDKGKTHSSGKLLFSARIIPYRGSW---LDFEFDPKDVLYFR 202

Query: 212 FPGMPSTIPLVILMRALG 229
                  +P+ IL++A+G
Sbjct: 203 V-DRRRKMPVTILLKAIG 219