Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1391 a.a., DNA-directed RNA polymerase subunit beta from Magnetospirillum magneticum AMB-1

 Score = 84.3 bits (207), Expect = 3e-20
 Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 13/158 (8%)

Query: 324 IELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQ 383
           +EL  G    DD DH  N+R++  G+LME+ +R    ++ + I+ ++           I 
Sbjct: 467 VELKDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMS-------SVDID 519

Query: 384 AAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PLSRSQP 439
           + +  D++  +   A A      G + +SQ +D+T+ L+ ++  RR+ +     L+R + 
Sbjct: 520 SVMPHDLINAKP--AAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERA 577

Query: 440 HFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKV 477
            FE RD+H T +G+ICP ETPEGPN GL+ +LA   +V
Sbjct: 578 GFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARV 615



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 30/91 (32%)

Query: 78  EARIRNLAYSAPLYLEMIPTVGEGEEE------KVLSPVEVYIGELPVMLGSEICHLCGK 131
           E + R + ++APL + +   V + +E+      + +   +VY+G++P+M  +        
Sbjct: 88  ECQQRGMTFAAPLKVTLRLVVWDIDEDTGSRSIRDIKEQDVYMGDMPLMTSN-------- 139

Query: 132 SAEELIKYGEDTQDPLGYFIVNGSEKAVVAQ 162
                           G F++NG+E+ +V+Q
Sbjct: 140 ----------------GTFVINGTERVIVSQ 154