Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta from Dickeya dianthicola ME23

 Score = 83.2 bits (204), Expect = 5e-20
 Identities = 89/360 (24%), Positives = 157/360 (43%), Gaps = 68/360 (18%)

Query: 162 QEDLIPNRIICEK----VEKNNKV-VDIAKVFSTRHGFRALCTVERNPDGLLNVSFPGMP 216
           Q +L+P R+  E     +E + KV V+  +  + RH  R L       DG+  +  P   
Sbjct: 238 QMELVPERLRGETASFDIEADGKVYVEKGRRITARH-IRQL-----EKDGIERIEVP--V 289

Query: 217 STIPLVILMRALGAESDREIIELISDEPTVVMQLIANLQEA------------------- 257
             I   +L +    ES  E+I + + E  + + L+A L +A                   
Sbjct: 290 EYIAGKVLAKDYVDESTGEVIAMANME--LSLDLLAKLSQAGHKRLDTLFTNDLDHGPYM 347

Query: 258 REEHAINTTED---ALEHIGKRVAPGQPK-----------------EYKLKRAETILCNY 297
            E   ++ T D   AL  I + + PG+P                   Y L     +  N 
Sbjct: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAETLFGNLFFSEDRYDLSAVGRMKFNR 407

Query: 298 LLPHMGVESEKLGAKCKYLGRMAKNSIELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRH 357
            L    +E   + +K   +  M K  I++  G    DD DH  N+R++  G++ E+ FR 
Sbjct: 408 SLLREEIEGSGILSKADIIDVM-KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466

Query: 358 SFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDR 417
              ++ + +K +L    +    P  Q  + +  ++  ++          G + +SQ +D+
Sbjct: 467 GLVRVERAVKERLSLGDLDTLMP--QDMINAKPISAAVKEFF-------GSSQLSQFMDQ 517

Query: 418 TSYLATVSQLRRVVS----PLSRSQPHFEARDLHATQWGKICPSETPEGPNCGLVKNLAV 473
            + L+ ++  RR+ +     L+R +  FE RD+H T +G++CP ETPEGPN GL+ +L+V
Sbjct: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577



 Score = 41.6 bits (96), Expect = 2e-07
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 36/173 (20%)

Query: 78  EARIRNLAYSAPLYLEMIPTVGEGEEE----KVLSPVEVYIGELPVMLGSEICHLCGKSA 133
           E +IR + +SAPL +++   + E E      K +   EVY+GE+P+M  +          
Sbjct: 84  ECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN---------- 133

Query: 134 EELIKYGEDTQDPLGYFIVNGSEKAVVAQEDLIPNRIICE---KVEKNNKVVDIAKVFST 190
                         G F++NG+E+ +V+Q    P         K   + KV+  A++   
Sbjct: 134 --------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179

Query: 191 RHGFRALCTVERNPDGLLNVSFPGMPSTIPLVILMRALGAESDREIIELISDE 243
           R  +      E +P   L V        +P  I++RAL + S  EI++L  D+
Sbjct: 180 RGSW---LDFEFDPKDNLFVRI-DRRRKLPATIILRAL-SYSTEEILDLFFDK 227