Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1291 a.a., DNA-directed RNA polymerase, beta subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 84.3 bits (207), Expect = 2e-20
 Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 13/180 (7%)

Query: 302 MGVESEKLGAKCKYLGRMAKNSIELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQ 361
           + +E+EK+    + +  + K  I L     V DD DH SN+R++  G+ +   F     +
Sbjct: 372 LDIEAEKIVLTTEDIINIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQLYSQFGVGLAR 431

Query: 362 LIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYL 421
           + + I+   ER  +R+ E         D++  R   ++   N   G   +SQ +D+T+ L
Sbjct: 432 MARTIR---ERMNVRDNEDFKPV----DLINARTLSSVI--NSFFGTNQLSQFMDQTNPL 482

Query: 422 ATVSQLRRVVS----PLSRSQPHFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKV 477
           A ++  RR+ +     LSR +  FE RD+H T +G++C  ETPEGPN GL+ +L V  KV
Sbjct: 483 AELTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKV 542



 Score = 39.7 bits (91), Expect = 7e-07
 Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 29/159 (18%)

Query: 82  RNLAYSAPLYLEM-IPTVGEGEEEKVLSPVEVYIGELPVMLGSEICHLCGKSAEELIKYG 140
           R L YS PL  ++ +    E  E+      EV++G LP M                    
Sbjct: 89  RGLTYSVPLKAKLRLLCSDEDNEDFETIEQEVFLGNLPYMTEK----------------- 131

Query: 141 EDTQDPLGYFIVNGSEKAVVAQEDLIPNRIICEKVEKNNKVVDIAKVFSTRHGFRALCTV 200
                  G F++NG+E+ +V+Q    P     +    N   +  A++   +  +    T 
Sbjct: 132 -------GSFVINGAERVIVSQLHRSPGVFFAQSKHTNGTKLYSARIIPFKGSWIEFATD 184

Query: 201 ERNPDGLLNVSFPGMPSTIPLVILMRALGAESDREIIEL 239
             N    +  ++       P+  L+RA+G  SD+ I++L
Sbjct: 185 INN----VMYAYIDRKKKFPVTTLLRAIGYGSDKAILDL 219