Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1371 a.a., DNA-directed RNA polymerase subunit beta from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 82.0 bits (201), Expect = 1e-19
 Identities = 67/278 (24%), Positives = 131/278 (47%), Gaps = 38/278 (13%)

Query: 229 GAESDREIIELISDEPTVVMQLI--------ANLQEAREEHAINTTEDALEHIGKRVAPG 280
           G E D   IE++       ++++        A ++        +  EDAL  + + + PG
Sbjct: 336 GDELDAPTIEVLEQNGFTTIEVLDIDHVTVGAYMRNTLRVDKNDNREDALFDVYRVMRPG 395

Query: 281 QPKE------------YKLKRAETILCNYLLPHMGVESEKLGAKCKYLGRM-AKNSIELY 327
           +P              +  +R +      +  +M +ES ++  + + L +      +++ 
Sbjct: 396 EPPTPEAAEAMFNSLFFDSERYDLSAVGRVKMNMRLESPEVSDEIRVLRKEDVLKVLQIL 455

Query: 328 LGLRVE----DDKDHYSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQ 383
           +GL+      DD D+  N+R++  G+L+E+ +R    ++ + IK ++           I 
Sbjct: 456 VGLKDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRMERAIKERMS-------SVDID 508

Query: 384 AAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PLSRSQP 439
             +  D++  +   A A      G + +SQ +D+T+ L+ ++  RR+ +     L+R + 
Sbjct: 509 TVMPHDLINAKP--AAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERA 566

Query: 440 HFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKV 477
            FE RD+H T +G+ICP ETPEGPN GL+ +LA   +V
Sbjct: 567 GFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARV 604



 Score = 42.0 bits (97), Expect = 1e-07
 Identities = 43/188 (22%), Positives = 85/188 (45%), Gaps = 38/188 (20%)

Query: 15  SLVKHHIDSYDDFVKNKIQRIIDEVTGVETEIKGGYKVSFGNVR-VTKPINKEADGSVKP 73
           +L++    SY+ F++ +++  + +  G+E   K  + +   N R + + ++ E +   +P
Sbjct: 41  NLIEVQRASYEQFLQREVRPGVRKEQGIEAVFKSVFPIKDFNERAILEYVSYEFE---EP 97

Query: 74  ITPMEARI-RNLAYSAPLYLEMIPTVGEGEEE------KVLSPVEVYIGELPVMLGSEIC 126
              +E  I R++ Y+APL +++   V E +EE      K +   +VY+G++P+M      
Sbjct: 98  KYDVEECIQRDMTYAAPLKVKLRLIVFETDEETGARSVKDIKEQDVYMGDIPLMTDK--- 154

Query: 127 HLCGKSAEELIKYGEDTQDPLGYFIVNGSEKAVVAQEDLIPNRIICE---KVEKNNKVVD 183
                                G FIVNG+E+ +V+Q    P         K   + K++ 
Sbjct: 155 ---------------------GTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 193

Query: 184 IAKVFSTR 191
            A+V   R
Sbjct: 194 AARVIPYR 201