Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1378 a.a., DNA-directed RNA polymerase beta chain from Agrobacterium fabrum C58

 Score = 81.6 bits (200), Expect = 2e-19
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 13/163 (7%)

Query: 319 MAKNSIELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNK 378
           + K  +EL  G    DD D+  N+R++  G+LME+ +R    ++ + IK ++    I   
Sbjct: 438 VVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLRMERAIKERMSSIEIDTV 497

Query: 379 EPSIQAAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PL 434
            P        D++  +   A A      G + +SQ +D+ + L+ ++  RR+ +     L
Sbjct: 498 MPQ-------DLINAKP--AAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGPGGL 548

Query: 435 SRSQPHFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKV 477
           +R +  FE RD+H T +G+ICP ETPEGPN GL+ +LA   +V
Sbjct: 549 TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARV 591



 Score = 33.9 bits (76), Expect = 4e-05
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 30/91 (32%)

Query: 78  EARIRNLAYSAPLYLEMIPTVGEGEEE------KVLSPVEVYIGELPVMLGSEICHLCGK 131
           E R R+L Y+APL + +   V + +E+      K +    VY+G++P+M  +        
Sbjct: 90  ECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDIKEQSVYMGDMPLMTNN-------- 141

Query: 132 SAEELIKYGEDTQDPLGYFIVNGSEKAVVAQ 162
                           G FIVNG+E+ +V+Q
Sbjct: 142 ----------------GTFIVNGTERVIVSQ 156