Pairwise Alignments

Query, 383 a.a., tRNA 4-thiouridine(8) synthase ThiI from Methanococcus maripaludis S2

Subject, 484 a.a., tRNA s(4)U8 sulfurtransferase from Pseudomonas simiae WCS417

 Score =  122 bits (305), Expect = 3e-32
 Identities = 107/381 (28%), Positives = 180/381 (47%), Gaps = 27/381 (7%)

Query: 3   KFIVR-YGEIGTKSRQTMHRFEKLLAKNISKLAKKHGISAEVEIIHTRLIVDV---PEEN 58
           K IV+ + EI  KSR    RF + LAKNI  + +    +  V  +   L ++      + 
Sbjct: 2   KLIVKVFPEITIKSRPVRTRFIRQLAKNIRAVLRDLDPAVVVNGVWDNLELETRVTEPKA 61

Query: 59  FEKMKELLKKVPGIVSFSPC-YYIDPDIEQIKKISSELFEKEIERYENKENITFRVKTQR 117
            + M E L  +PGI  F     Y   D + I +   + +  E+E         F V+ +R
Sbjct: 62  LKDMTERLSCMPGIAHFLQVDEYPLGDFDDITEKCKQHYGSELE------GKIFSVRCKR 115

Query: 118 PQKKFPLTSLEVNMEVGGPISEKYGIK-VDLKNPTISLDIEVFNEYAYVFAKRIEGIGGI 176
             K    +S++V   VG  +  + G   + LK P I + +E+ ++  +V   +   IGG 
Sbjct: 116 AGKH-TFSSMDVEKYVGSKLRRECGASGISLKAPQIEVRMEIRDQRLFVIHSQHNSIGGY 174

Query: 177 PVGTQGKVIVLLSDGIDSPVSAYMMAKRGCKLLLLHM-------KTSDEGLEKTQKLVDV 229
           P+G   + +VL+S G DS V+AY + +RG   L+ H        +  + G+ +    +  
Sbjct: 175 PLGALEQTLVLMSGGFDSTVAAYQIMRRG---LMSHFCFFNLGGRAHELGVMEVAHFIWK 231

Query: 230 LSDFDPEAKFVYVDFNEELAKIKAELTEINRDKYTCLYCKKYMLKLAEKHAKWHKCDAIV 289
                    FV V F E L +I  ++     + +  +  K+ ML+ A + A   + DA+V
Sbjct: 232 KYGSSQRVLFVSVPFEEVLGEILGKVD----NGHMGVVLKRMMLRAASRIADKLQIDALV 287

Query: 290 NGDNMGQVASQTLKNLRVISEGIDYPILRPLIGLDKVEIMDIARKIGTFDISTSKEVSCF 349
            G+ + QV+SQTL NL +I    +  +LRPLI   K +I+D+A +IGT D +      C 
Sbjct: 288 TGEAISQVSSQTLPNLSIIDCVTEKLVLRPLIASHKQDIIDLAEQIGTADFAKHMPEYCG 347

Query: 350 AVPKHPITNATPDEMEKIEEQ 370
            +  +P T+A    +E  E++
Sbjct: 348 VISVNPKTHAKRHRVEHEEKE 368