Pairwise Alignments

Query, 264 a.a., polyprenyl diphosphate synthase from Methanococcus maripaludis S2

Subject, 270 a.a., Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) from Xanthobacter sp. DMC5

 Score =  161 bits (408), Expect = 1e-44
 Identities = 91/231 (39%), Positives = 133/231 (57%), Gaps = 4/231 (1%)

Query: 33  PKHVGIIMDGNRRLAKKLGENPELGHNLGASKVHEVIDWCVSLKIPTITLYAFSLENFNR 92
           P HVG+IMDGN R A         GH  G   +   +     + I  +T+Y+FS EN++R
Sbjct: 36  PVHVGVIMDGNGRWATSRKLPRVEGHRRGVEALRRCVRAAREIGIRFLTIYSFSAENWSR 95

Query: 93  PEKEVKVLMDLFEREFIEIADHPDVHKDKIRVSVIGRREMLPEYVQKAINYAEDKTKGYS 152
           P  EV  LM L +  F    D  +++   +RV VIG R  L   +++ ++ AE  T   +
Sbjct: 96  PVTEVTELMRLLK--FFLRHDLAELNSANVRVKVIGERAALAPDIRQLLDDAEALTCTNT 153

Query: 153 DYFVNFAIAYGGQQEIIDSVKKIAKQVKNGEIDIEDINIELISKNLYTSNLPSPNPDLII 212
              +  A  YG +QEI  +V +IA  V  G +  ED+++ +IS+ L T+ +P  +PDLI+
Sbjct: 154 GLTLVVAFNYGARQEIASAVARIAADVAAGRVKPEDVDVAMISQRLETAGIP--DPDLIV 211

Query: 213 RTSGEERISNFLTWQSCYSELYFCETYWPTFRKVDLLRSIREYQKRERRYG 263
           RTSGE+R+SNFL WQ+ YSE  F   YWP F K  L+ +I EY +R+RR+G
Sbjct: 212 RTSGEQRLSNFLLWQAAYSEFVFLPIYWPDFDKAALIAAIDEYARRDRRFG 262