Pairwise Alignments

Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2

Subject, 1162 a.a., chromosome segregation protein SMC from Pseudomonas simiae WCS417

 Score = 63.9 bits (154), Expect = 6e-14
 Identities = 66/296 (22%), Positives = 135/296 (45%), Gaps = 35/296 (11%)

Query: 1   MIIKNIKMENFRSHRN-TSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFRIEN 59
           M +K IK+  F+S  + T++NF   + +++G NG GKS+I  A+ + +      N R E+
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 60  L---------MQQGAASFSVELEFEMMGNTYLVK---------RKRFQHKTDDKLYVNG- 100
           +          ++  +  S+EL F+    T + +         R++    + +  ++NG 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLIGEYAAYAEISIRRKVTRDSQNSYFLNGT 120

Query: 101 KLNAESASEINKKIEEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLGIEKY 160
           K      ++I       L       S +I I+QG I+ LI+  P D +  I +  GI KY
Sbjct: 121 KCRRRDITDI------FLGTGLGPRSYSI-IEQGMISKLIEAKPEDLRNFIEEAAGISKY 173

Query: 161 -EKASEKMNIVKKSYEE--TLLKLEGELTQEPEILENLEKLKNEVSESEILKEEILKKYE 217
            E+  E  N +++++E    L  L  EL ++   LE L +      + +  K E  +   
Sbjct: 174 KERRRETENRIRRTHENLARLTDLREELERQ---LERLHRQAQAAEKYQEYKGEERQLKA 230

Query: 218 NLEKLKLEKNSEILQMEEKFAENNQLKENLKDIISEIKNINLEIQNFKNSLNLVAE 273
            L  L+ +  ++ +   E      ++  + + +++E +N +  I+  ++  + ++E
Sbjct: 231 QLSALRWQALNDQVGQREAIIGTQEI--SFEALVAEQRNADASIERLRDGHHDLSE 284



 Score = 41.6 bits (96), Expect = 3e-07
 Identities = 92/516 (17%), Positives = 199/516 (38%), Gaps = 51/516 (9%)

Query: 480  ISEYKNSKAELEKTKDSCHVCQSKITEEKKQELLEKYNSEIQNEQLSTESLKKQLEIILN 539
            I+E +  +A LE  +      ++  T+ +++   E     +Q+E      LK QL     
Sbjct: 660  IAEREEREATLESLETELQTLRA--TQRQQETGREHLRRLLQDEARQQGELKAQLSASKA 717

Query: 540  KKEKMKVKLNEIDSFKLKYGELKEKKNYSLKVEESIIETTEKLNELTGKINEYSSLNDEI 599
            K E++ ++   +D    + GE +  ++   ++ E+ +   E L+ +     +   L  + 
Sbjct: 718  KVEQLTLRRTRLDEEVAEMGEQRALEHE--QIGEARLHLQEALDSMALDTEQRELLLAQR 775

Query: 600  SLIENKLKNLENDYKNCNYSSQFLTKNDESEFLTKKLELSKIIGDYDSSKIENEKKSLEN 659
              +  +L  +  + +            D +  L  +L   K      +  +E  +   E 
Sbjct: 776  DSLRERLDRVRQEARQ---------HKDHAHQLAVRLGSLKAQHASTAQALERLEMQSER 826

Query: 660  LKDELKNTIYNLER-EINLKKELKNIQNDISSKIGIVECYVKWETEKSDFENKLSECKEN 718
            L ++ +    NLE  E  L++    ++  +  ++ + E     +    D + +L + ++ 
Sbjct: 827  LTEKREQLSLNLEEGEAPLEELRLKLEELLDKRMTVDEELKTAQIALEDADRELRDAEKR 886

Query: 719  YEKYMESLAVLKNYSKTYSVEINNLNEFLNQKIAEKQQFCEKLLETRTEIEKNIQTVNYN 778
              +  +   +++   +   +E   L          ++   ++LLE   ++   + T+   
Sbjct: 887  RTQAEQQSQLIRGQLEQQRMEWQALT-------VRRKTLQDQLLEDGYDLHGVLNTLT-- 937

Query: 779  PELHENAKRLYENILNEFNDILRTLERISSEL-KLKNENISYLNEKIQNLSNKKEEKKKI 837
                 N K   E            LERI++ + +L   N++ ++E  Q    K+    + 
Sbjct: 938  --AQANEKEAEEE-----------LERIAARIQRLGAINLAAIDEYQQQSERKRYLDAQD 984

Query: 838  EEFKEYLDKIKREIFSKDGFQKYLREKYIPLIQRHTNQIFQE-FELPYSHIQLKD----D 892
             +  E LD ++  I   D   +   +     I      +F + F    ++++L      D
Sbjct: 985  ADLVEALDTLENVIRKIDKETRNRFKDTFDQINSGLQALFPKVFGGGSAYLELTGEDLLD 1044

Query: 893  YSLIVDGLP-------VETLSGGEQIAVSLALRLGISKAVCNNIECIILDEPTAYLDEDR 945
              + +   P       +  LSGGE+   +LAL   I K   N     +LDE  A LD+  
Sbjct: 1045 TGVTIMARPPGKKNSTIHLLSGGEKALTALALVFAIFKL--NPAPFCMLDEVDAPLDDAN 1102

Query: 946  RKNLLNIFKNIKTINQMAIITHHQELEQIADNIVKV 981
                  + K +    Q   ITH++   ++AD ++ V
Sbjct: 1103 VGRYARLVKEMSQTVQFIYITHNKIAMEMADQLMGV 1138



 Score = 28.9 bits (63), Expect = 0.002
 Identities = 65/385 (16%), Positives = 166/385 (43%), Gaps = 57/385 (14%)

Query: 347  LKENDEKILILDKIKEKIKELEFIEKQIYEIKIHKKTVETLFDSVK-IYDDSIKTFEELK 405
            L    E + ++ + +E+   LE +E ++  ++  ++  ET  + ++ +  D  +   ELK
Sbjct: 650  LARGQEIVNLIAEREEREATLESLETELQTLRATQRQQETGREHLRRLLQDEARQQGELK 709

Query: 406  TK----KNSYENLLKEKFDLEKKLQNETDEKTKLISELTD----FEKIEEKINLENELKE 457
             +    K   E L   +  L++++    +++     ++ +     ++  + + L+ E +E
Sbjct: 710  AQLSASKAKVEQLTLRRTRLDEEVAEMGEQRALEHEQIGEARLHLQEALDSMALDTEQRE 769

Query: 458  ----KYEDLSEKIDKLNEIVLKKES-------KISEYKNSKAELEKTKDSCHVCQSKITE 506
                + + L E++D++ +   + +        ++   K   A   +  +   +   ++TE
Sbjct: 770  LLLAQRDSLRERLDRVRQEARQHKDHAHQLAVRLGSLKAQHASTAQALERLEMQSERLTE 829

Query: 507  EKKQELLEKYNSEIQNEQLSTESLKKQLEIILNKK----EKMKVKLNEIDSFKLKYGELK 562
            +++Q  L      ++  +   E L+ +LE +L+K+    E++K     ++    +  +  
Sbjct: 830  KREQLSL-----NLEEGEAPLEELRLKLEELLDKRMTVDEELKTAQIALEDADRELRD-A 883

Query: 563  EKKNYSLKVEESIIETTEKLNELTGKINEYSSLNDEISLIENKLKNLENDYKNCNYSSQF 622
            EK+    + +  +I       +L  +  E+ +L      ++++L  LE+ Y      +  
Sbjct: 884  EKRRTQAEQQSQLIR-----GQLEQQRMEWQALTVRRKTLQDQL--LEDGYDLHGVLNTL 936

Query: 623  LTKNDESEFLTKKLELSKI-----------IGDYDSSKIENEKKSLENLKD----ELKNT 667
              + +E E    + EL +I           +   D  + ++E+K   + +D    E  +T
Sbjct: 937  TAQANEKE---AEEELERIAARIQRLGAINLAAIDEYQQQSERKRYLDAQDADLVEALDT 993

Query: 668  IYNLEREINLKKELKNIQNDISSKI 692
            + N+ R+I+  KE +N   D   +I
Sbjct: 994  LENVIRKID--KETRNRFKDTFDQI 1016